Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3187 ATGATGATGATGAACCGTGGGTCAAATGTTTCAGCTGAAGTGGGTGGTTCCGGTGGGAGTGGCGATGAGCTGTATGAGCCGCTTTGGAAGCTGAGCGCGGGACCACTGGTTGATGTTCCTCGTGTTGGACAGAGGGTCTTCTATTTCCCTCAGGGGCACATGGAACAATTAGAGGCTTCAACCAATCAGGAGCTGAATCAGAGGATTCCTCTCTTGAAGCTTCCAACAAAGATCCTTTGTAGAGTTGTGAATGTTCATTTAATGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTTTGGTGCCCGAATCTAATCAAGATGAGCCGACAAGCCCTGATCCGTGCCCTGCTGAACCTCCGAAGCCAACAGTTCACTCGTTTTGCAAGGTCTTGACCGCTTCGGATACAAGTACTCATGGGGGCTTCTCTGTTCTCAGGAAACATGCCACAGAATGCCTTCCTGCTTTGGACATGTCACAACAAACACCAACCCAGGAATTGGTTGCCAAGGATCTTCTTGGTTACGAATGGCGCTTCAAGCATATATTTCGAGGCCAGCCACGGAGACACCTGCTTACAACTGGATGGAGTACTTTTGTGACCTCCAAAAGATTAGTTGCCGGAGATACCTTTGTGTTTTTGAGAGGGGAAAATGGGGAATTACGTGTTGGAGTGAGGCGTCTTGCTCGTCAGCCAAGTAGCATGCCGTCGTCTGTGATTTCCAGTCAGAGCATGCACCTCGGAGTTCTGGCTACTGCCTCACATGCTGTTGCAACTCAAACTCTATTTGTAGTATATTATAAGCCAAGGACAAGCCAATTCATCATAAGCGTGAATAAGTATTTGGAGGCCATGAACAACAAGTTCAGTCTTGGCATGAGGCTGAAGATGAGGTTCGAGGCGGATGATGCCTCTGAGACAGACAAAAGATTCTCGGGTACCATAGTTGGAGTAGAAGATATTTCTCCTCATTGGGTGAATTCGAAATGGCGTTCACTTAAGGTTCAATGGGATGAACCTGCAGCTGTTACAAGACCCGATAGGGTTTCACCATGGGAGATAGAACCCTTTGTGGCTTCTGCTTCCACACCCTCAGTTCAACCTACAGTTGTAAAAACTAAAAGGCCTCGACAACCAAGCGAAATTCCAGATGTTGACACAACATCAGCTGCCTCTGCTTTTTGGGATGCTGGAATGAAACATGCTGACATGACACAACTTGGTGTTTTATCTGAAAGCAAAAGAAGCGATGTGAGTGGTATGTGGCATCATAAGCAAACTGATATGAATAGTAAAACCAACAGCAACACTATGTCAAGGAACCAGACAGAAGCAAGTTGGCTATCTTCTCCCCATTCGAGTTATCCTTCTCATTTAGTTCAGGACACAACAGATGATAGCAAGAGCGTCTCAGCCTGGCCTGTTTCAAAGCCTCATGCATCCAGAATGAACATCGATTACGTGCTTGATCAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACGAGTTATCGCTTGTTTGGAATTGACCTTATCGATCATTCCAGGAACTCAGCTGCTGCAGAAAATGCATCTCCACATGTAGTAAATGTACCCAGAGCTGAAGTCTGTGCCACTGCCAGCACCTTGTCCAAAACTGATAGTGGCTCTAAGTCAGATATCTCGAAGGCTTCCGAGAGAAAACAAGAACAGCAGCAAGTACCCCAGAAGGAGACTCAGAGCAAGCAAATTTGTGGCCGAAGTCGCACCAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCGGTGGACTTGAACACGTTGGATGGTTATGATCAACTTATAGATGAACTGGAGCAGCTGTTTGACTTAAAGGGACAACTTCAACACAGAAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTGGGAGATGATCCATGGCCTGAATTTTGTAATATGGTGAAAAGAATCTTCATTTGCTCCAGCCAGGATGTGAAGAAGATGAGTTCAGGAAGCAAACTACCAATCTCTTCCATGGAAGAAGGGACTGTAATAAGCTCAGAGACAACCGAAACCTGA 2082 0.4606 MMMMNRGSNVSAEVGGSGGSGDELYEPLWKLSAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCRVVNVHLMAEQETDEVYAQITLVPESNQDEPTSPDPCPAEPPKPTVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQQTPTQELVAKDLLGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQPSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKYLEAMNNKFSLGMRLKMRFEADDASETDKRFSGTIVGVEDISPHWVNSKWRSLKVQWDEPAAVTRPDRVSPWEIEPFVASASTPSVQPTVVKTKRPRQPSEIPDVDTTSAASAFWDAGMKHADMTQLGVLSESKRSDVSGMWHHKQTDMNSKTNSNTMSRNQTEASWLSSPHSSYPSHLVQDTTDDSKSVSAWPVSKPHASRMNIDYVLDQVDKESKVETATSYRLFGIDLIDHSRNSAAAENASPHVVNVPRAEVCATASTLSKTDSGSKSDISKASERKQEQQQVPQKETQSKQICGRSRTKVQMQGVAVGRAVDLNTLDGYDQLIDELEQLFDLKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDVKKMSSGSKLPISSMEEGTVISSETTET* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3187 693 Pfam AUX/IAA family 625 666 IPR033389 -
Lja3g3187 693 Pfam AUX/IAA family 457 618 IPR033389 -
Lja3g3187 693 CDD B3_DNA 127 229 IPR003340 GO:0003677
Lja3g3187 693 Pfam Auxin response factor 255 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja3g3187 693 MobiDBLite consensus disorder prediction 670 693 - -
Lja3g3187 693 Gene3D - 578 670 - -
Lja3g3187 693 PANTHER AUXIN RESPONSE FACTOR 19 682 - -
Lja3g3187 693 MobiDBLite consensus disorder prediction 449 477 - -
Lja3g3187 693 MobiDBLite consensus disorder prediction 370 389 - -
Lja3g3187 693 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Lja3g3187 693 Coils Coil 606 626 - -
Lja3g3187 693 MobiDBLite consensus disorder prediction 449 473 - -
Lja3g3187 693 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677
Lja3g3187 693 ProSiteProfiles PB1 domain profile. 582 663 IPR000270 GO:0005515
Lja3g3187 693 MobiDBLite consensus disorder prediction 554 568 - -
Lja3g3187 693 Gene3D - 290 365 - -
Lja3g3187 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 682 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja3g3187 693 SUPERFAMILY CAD & PB1 domains 583 658 - -
Lja3g3187 693 Gene3D - 126 230 IPR015300 -
Lja3g3187 693 SMART B3_2 129 231 IPR003340 GO:0003677
Lja3g3187 693 MobiDBLite consensus disorder prediction 542 582 - -
Lja3g3187 693 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3187 Lja-Chr3 61543783 61548419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3187 21 675 B3 DNA Binding Superfamily AT4G23980 59.788 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja3g3187 AUX_IAA 5.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3187 K14486 - gmx:100779003 1144.8