Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3186 ATGACGACTAGAATAGCGCCCGGTGTTGGTGCCAATTTGCTAGGTCAACACGCCGCCGAGCGGAACCAAGATGCTACGGCTTACGTCGGCAACCTCGACCCTCAGATTACGGAGGAGTTGTTGTGGGAGCTTTTTGTTCAGGCAGGTCCAGTAGTTAATGTCTATGTTCCAAAGGATAGAGTCACCAACCAACATCAAGGTTATGGGTTTGTCGAGTTCCGCAGCGAAGAAGATGCTGATTATGCCATCAAAGTGCTTAACATGATTAAGCTTTATGGAAAACCAATACGCGTAAATAAGGCATCCCAGGATAAGAAGAGCTTGGATGTTGGAGCAAACCTTTTCATTGGCAATCTGGATCCTGATGTAGATGAGAAGCTATTGTATGACACTTTCAGTGCGTTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGACACAGGAAACTCCCGAGGTTTTGGCTTCATTAGCTACGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGACAATATCTTTGCAATCGCCAAATTACAGTGTCATATGCTTATAAAAAGGACACCAAAGGTGAAAGGCATGGTACTCCTGCAGAAAGAGTTTTGGCTGCAAGTAATCCAACTGCACAAAAGAGCAGGCCTCATACTTTATTTGCTAGTGGGCCTCCAACACTCGCAGGTGCTCCTCAGGCTAATGGCACCATTGCTGCACCAGTGCCTCCGCGCCCCTTTGCGAATGGGGTTGCTCCACCCGCCCTACGTCAACCACCTCCGCCTCAAGCTGCACCCTTCCAGCCTATGCCGGGACAACCAACATGGCATCAACAGCAGCCAGGTCAATTACCACCACCCACAATGCCTCCACCTCAGTACCAGCAGTTCAGGCCACCTCCCTCTGGTATGCAGATGCCTCCACCTCCACAAGGTGTTCCAGGTCCTCCAAGGCATCTTCCACCGCCAGCAGTAATGGGAGGCCAGCCACCACAGGTTTGGCGGCCACCACCACCACCACAATATCAGCAACAGGTTGGACGCCCGATGGCATATCCTCAGTCTTCAATGCCACCTCCACCACCACTTCCCAATAACCATGGGATGCCACCGCCTTCAAGTTGA 1131 0.5013 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLAGAPQANGTIAAPVPPRPFANGVAPPALRQPPPPQAAPFQPMPGQPTWHQQQPGQLPPPTMPPPQYQQFRPPPSGMQMPPPPQGVPGPPRHLPPPAVMGGQPPQVWRPPPPPQYQQQVGRPMAYPQSSMPPPPPLPNNHGMPPPSS* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3186 376 CDD RRM2_SF3B4 111 193 IPR034159 -
Lja3g3186 376 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Lja3g3186 376 MobiDBLite consensus disorder prediction 248 271 - -
Lja3g3186 376 CDD RRM1_SF3B4 28 100 IPR034158 -
Lja3g3186 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Lja3g3186 376 Gene3D - 111 200 IPR012677 -
Lja3g3186 376 MobiDBLite consensus disorder prediction 193 376 - -
Lja3g3186 376 Gene3D - 16 110 IPR012677 -
Lja3g3186 376 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 353 - -
Lja3g3186 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Lja3g3186 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Lja3g3186 376 MobiDBLite consensus disorder prediction 208 222 - -
Lja3g3186 376 PANTHER TRANSFORMER-2-RELATED 1 353 - -
Lja3g3186 376 MobiDBLite consensus disorder prediction 355 376 - -
Lja3g3186 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Lja3g3186 376 SMART rrm1_1 26 99 IPR000504 GO:0003723
Lja3g3186 376 SMART rrm1_1 113 187 IPR000504 GO:0003723
Lja3g3186 376 MobiDBLite consensus disorder prediction 282 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3186 Lja-Chr3 61419196 61428243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3186 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 36.145 3.47e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3186 K12831 - gmx:100792707 525.783