Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3172 ATGAATCCATACCTGCTGGGTAGGTTGAGGAATCAATCTTTTCCAGTTCTGCAGAATCAGGGTTTTTCTGCTGGACCCAGATTTGAAAATCACTCCTTTGAACAAACTAGAGAATTTGATTATCTCCAGTCTGATCCAGTGCCTGCTAATACACCTTCATCCTCTACTGTTACCCATGAGGAGCCTTCTCCAGAGGATTGTGAGTTTTCTGATGCAGTTTTGAGCTATATCAACCAGATCCTTATGGAAGAAGACATGGAAGACAAGACATGTATGCTTCAAGATTCTTTAGATCTTCAGGCAGCTGAGAAATCGTTATACGAGGCGCTGGGTGAAAAGTATCCACCCTCACCAATACAAAATCCAAGTTTTGTCAATCAAAATGTAGAGGTTGGAGGTAATCACTTTTCTAGAAATTATGGCAATTTTCCTGGTACCAGTGGTGATCTCAGCAGCATTTTTATCAATCAAAATGATGGGGTTGGAGGTAATCACTTTTCGAGAAGCAATGGTAATTTATCACTCCCAAGCTCAATTGACTTCCCTCCAGAAAGTCTTCAAAGTAATAGTATTTTACAATCAACTTATAGCCCTTCCAATAGTGTAATAAGTAGTGTTGAAGGGCCTGTACACTCTCCAAACAGTATTCTTCAGGTGCCTGATCTGAGAAGTGAGAGTCAATCCATTTCTCAATTTCAGAAGGGTGTTGAGGAGGCTAGTAAGTTTCTTCCAAGTGGAAATGAGTTCTTTTCTAATTTGTCACCACTAAATCCGAAAGTAGAAAAAGATGAATTGTCAGTTAAGGCGGAGAAGGATGAGAATGATCGCGTTCTCAGTGAATCCACGGCGGTAAGGAAGCATCCTCATAGGGAAGAGGGGGATGATGAAGAAAATAGAAGCAGCAAGCAAGCAGCTATTTATTCTGAACCAACATTGCGCTCAAGTATGTTTGATATATTTTTGCTTCATAGCACAGGGGATGGTAAGGATCATTATGTGGCTCGCCGTGAAGCTTTGCAGATTAAGACAGAGAAGACAGTGTTGCCAGGTAGTCAATCAAAAGGCTCCAATAGCAGGAAGGGACGTGGGAAGAAACAAAAGGGAAAAAAAGAAGTGATTGATTTGAGAACACTTCTGGTCCTTTGTGCCCAAGCTGTTGCTGCAGATGACCATAGGAATGCGCAGGAGTTGCTAAAGCAGATCAGGCAACACTCAAATCGTTTCGGGGATGGAAATCAGAGGCTTGCTCATATCTTTGCAGACGGTCTTGAGGCACGTTTGGCTGGTACTGGAAGCCAAATCTATAAAGGACTTGTTAGTAAGAGAACATCATCTGCTGATATTCTAAAAGCTTATCATCTATTCCTCGCTGCATGCCCTTTTAGGAAAATTTCTAATTTTATGTCAAATATCACAATAAGGACATCTTCAGAAAATTCAATGAGGGTCCATGTTATAGATTTTGGTATCCTTTATGGTTTTCAGTGGCCCACTTTTATACAGCGCCTATCATGGAGAACAGGAGGACCACCAAAGCTTAGGATTACAGGAGTAGATTTCCCACAACCTGGTTTCAGGCCTGCAGAGAGAATTAAAGAAACAGGATGCCGCTTGGCGGCTTATGCTGAAGCCTTTAATGTTCCATTTGAGTTCAATGCCATAGCAACAAAATGGGAAACAATTCAACTAGAAGATCTCAAGATTGATAGGGATGAGTTCCTTGTTGTCACATGTTTCTATAGAGGTAAGAACTTGCTGGATGAATCTGTGGTAGTGGACAGTCCAAGGAATAATTTCCTCAGTTTGATTAGGAAGATCAACCCAAATTTATTCATTCATGGCATTACCAATGGGGCATTTAATGCCCCGTTCTTTGTCACCCGGTTCCGGGAGGCACTGTTTCACTACTCAGCACTGTTTGATATGCTTGAAACTATTGTGCCTCGAGAGGACTGGGAAAGGATGCTGATTGAGAAAGAGATATTTGGGAGGGAAGCGTTGAATGTTATAGCTTGTGAAGGGTGTGAAAGAGTAGAGAGGCCCGAGACATATAAGCAGTGGCAAGCGCGGATTCTGAGGGCTGGGTTTTCACAACAACGTTTTGATCGTGAGACTATTAAGATGGCAATAGAGAAAGTCAGGTCTGGCTACCACAAGGATTTTGTGATTGATGAAGATAGCCAGTGGTTGTTGCAAGGTTGGAAGGGGCGTATCATTTATGCCCTTTCTTGCTGGACACCTGCATAA 2247 0.421 MNPYLLGRLRNQSFPVLQNQGFSAGPRFENHSFEQTREFDYLQSDPVPANTPSSSTVTHEEPSPEDCEFSDAVLSYINQILMEEDMEDKTCMLQDSLDLQAAEKSLYEALGEKYPPSPIQNPSFVNQNVEVGGNHFSRNYGNFPGTSGDLSSIFINQNDGVGGNHFSRSNGNLSLPSSIDFPPESLQSNSILQSTYSPSNSVISSVEGPVHSPNSILQVPDLRSESQSISQFQKGVEEASKFLPSGNEFFSNLSPLNPKVEKDELSVKAEKDENDRVLSESTAVRKHPHREEGDDEENRSSKQAAIYSEPTLRSSMFDIFLLHSTGDGKDHYVARREALQIKTEKTVLPGSQSKGSNSRKGRGKKQKGKKEVIDLRTLLVLCAQAVAADDHRNAQELLKQIRQHSNRFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRTSSADILKAYHLFLAACPFRKISNFMSNITIRTSSENSMRVHVIDFGILYGFQWPTFIQRLSWRTGGPPKLRITGVDFPQPGFRPAERIKETGCRLAAYAEAFNVPFEFNAIATKWETIQLEDLKIDRDEFLVVTCFYRGKNLLDESVVVDSPRNNFLSLIRKINPNLFIHGITNGAFNAPFFVTRFREALFHYSALFDMLETIVPREDWERMLIEKEIFGREALNVIACEGCERVERPETYKQWQARILRAGFSQQRFDRETIKMAIEKVRSGYHKDFVIDEDSQWLLQGWKGRIIYALSCWTPA* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3172 748 Pfam GRAS domain family 375 746 IPR005202 -
Lja3g3172 748 MobiDBLite consensus disorder prediction 266 302 - -
Lja3g3172 748 MobiDBLite consensus disorder prediction 44 66 - -
Lja3g3172 748 PANTHER SCARECROW-LIKE PROTEIN 9 35 746 - -
Lja3g3172 748 MobiDBLite consensus disorder prediction 343 368 - -
Lja3g3172 748 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 35 746 IPR005202 -
Lja3g3172 748 ProSiteProfiles GRAS family profile. 366 746 IPR005202 -
Lja3g3172 748 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3172 Lja-Chr3 60957118 60960371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3172 65 747 GRAS Transcription Factor Family AT2G37650 53.237 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g3172 GRAS 9.7e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3172 - - gmx:100780785 1096.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3172 3 60957118 60960371 Lja3g3172 3 60957118 60960371 ECH
Lja3g3172 3 60957118 60960371 Lja3g0707 3 7082565 7085873 ECH