Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3169 ATGACCACCAAAATGGTTCTTCTCTGCGCCGCTTCACTGGTCACCCTTTTTGTCACAACCAGTGCTCGAATCCCCGGCGTTTACACCGGCGGCGCTTGGCAGAGCGCCCACGCCACCTTCTACGGCGGAAGCGACGCCTCTGGAACAATGGGGGGTGCATGTGGGTATGGGAATCTGTACAGCCAAGGGTATGGGGTCAACACTGCTGCTCTGAGCACTGCACTGTTCAACAATGGCCTCAGCTGCGGCGCGTGCTTCGAGATCAAGTGTGACCAAGACCCTAGATGGTGTAACCCTGGAAGCCCTTCCATCATCGTCACCGCCACTAACTTCTGTCCTCCGAACTTGGCTCAGCCCAGTGATGACGGCGGTTGGTGCAACCCGCCACGGACCCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCTCAGTACCGCGCCGGAATCGTCCCGGTGACTTACCGTCGGGTCCCATGTAGAAAGAAGGGTGGAATCAGATTCACCATCAACGGTTTCCGCTACTTCAACTTGGTTTTAATCAGCAACGTCGCAGGTGCAGGTGATATCGTGCGCGTGAGTGTGAAAGGAGCCAACTCTGGTTGGAACAGCATGAGCCGAAACTGGGGGCAAAATTGGCAATCCAACTCTGATTTAGTGGGCCAGGCACTGTCTTTCAGGGTCACGGGTAGTGACAGACGCACCTCAACCTCGTGGAACGTGGCACCATCTCATTGGCAGTTTGGTCAAACCTTCACGGGAAAGAATTTCAGAGTCTGA 780 0.5564 MTTKMVLLCAASLVTLFVTTSARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCDQDPRWCNPGSPSIIVTATNFCPPNLAQPSDDGGWCNPPRTHFDLAMPMFLKIAQYRAGIVPVTYRRVPCRKKGGIRFTINGFRYFNLVLISNVAGAGDIVRVSVKGANSGWNSMSRNWGQNWQSNSDLVGQALSFRVTGSDRRTSTSWNVAPSHWQFGQTFTGKNFRV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3169 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Lja3g3169 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Lja3g3169 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Lja3g3169 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Lja3g3169 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Lja3g3169 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Lja3g3169 259 SMART dpbb_1 68 155 IPR007112 -
Lja3g3169 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Lja3g3169 259 Gene3D - 19 161 IPR036908 -
Lja3g3169 259 PANTHER EXPANSIN-A15 4 258 IPR002963 GO:0009664
Lja3g3169 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Lja3g3169 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Lja3g3169 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Lja3g3169 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Lja3g3169 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Lja3g3169 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Lja3g3169 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Lja3g3169 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Lja3g3169 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Lja3g3169 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Lja3g3169 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Lja3g3169 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Lja3g3169 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Lja3g3169 259 Gene3D - 165 257 IPR036749 -
Lja3g3169 259 PANTHER EXPANSIN 4 258 - -
Lja3g3169 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3169 Lja-Chr3 60890581 60893879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3169 1 259 Expansin Gene Family AT2G39700 81.467 5.66e-162 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3169 - - gmx:100803595 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3169 3 60890581 60893879 Lja3g3169 3 60890581 60893879 ECH
Lja3g3169 3 60890581 60893879 Lja3g0713 3 7136539 7139172 ECH
Lja3g3169 3 60890581 60893879 Lja3g2768 3 41046403 41048559 ECH