Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3167 ATGGGTGCTTGCTGGAGCAATAGGATTAAGGCTGTGAGTCATTCCAATACAGGGTTCACTTCTAGAAGTGTGAGCAGAGATGGTTCAAATAGCAGGAGCTCATCCACTCCTCGGAGTGAGGGTGAGATCTTACAATCTTCCAATTTGAAAAGCTTCAGCTACAATGAGATAAGAACAGCTACAAGAAATTTCCGCCCGGACAGTGTCTTAGGCGAGGGTGGATTCGGTTCTGTTTATAAGGGTTGGATTGATGAGCATTCACATGCTGCTACCAGGCCGGGAACTGGCATTGTTATTGCTGTGAAGAAACTTAACCAGGAAGGGTTCCAGGGTCACAAGGAATGGTTGGCTGAGATTAACTATCTTGGGCAGCTGCAGCATCCTAATCTTGTCAAGTTGATAGGCTACTGCTTAGAGGATGAGCACCGAGCTCTAGTTTATGAATTTATGCCTAAGGGCAGTGTGGAGAATCATCTGTTCAGGAGAGGATCTTATTTTCAGCCTCTATCTTGGACTTTAAGATTGAAAATTGCCCTCGGGGCTGCAAGGGGTCTTGCTTTTCTCCATAGCACAGAAGCTAAGATCATATACCGTGACTTTAAGACTTCAAATATCCTGCTTGATACTAACTATAATGCCAAACTTTCTGATTTTGGGCTGGCCAGAGATGGGCCAACTGGTGATAAGAGCCATGTTTCTACTAGAGTCATGGGAACACATGGATATGCTGCGCCAGAGTATCTAGCAACAGGTCATCTCACTGCCAAGAGTGATGTATATAGTTTTGGAGTAGTTCTTCTGGAAATGTTATCAGGAAGACGTGCTATAGACAAGAACCGGCCATCTGGAGAACACAATCTAGTTGAGTGGGCAAAACCTTACCTTTCTAACAAACGTAGAGTTTTTCGTGTGATGGATAGCCGTCTTGAGGGCCAGTATTCCCTCGATAGAGCTCAAAGGACAGCCACCCTTGCTTTTCAATGTCTTGCTGTGGATCCTAAATTCAGGCCAACCATGAATGAGGTGGTGAGAGTGTTGGAGCAGCTAAAGGAATCAGAGGAGAAGATTAAAAAAAACAGTGATCAGAAAGAGCATAGGGTTCGTGGCTCTGGCCTTGGCCATGCCCCTGCATCTGGGAAAGGAAGTGGAGATACTCCTAAAATAATTGCTTATCCTAGGCCTTCTGCTTCTCCCTTGTATGCTTCATAG 1209 0.4516 MGACWSNRIKAVSHSNTGFTSRSVSRDGSNSRSSSTPRSEGEILQSSNLKSFSYNEIRTATRNFRPDSVLGEGGFGSVYKGWIDEHSHAATRPGTGIVIAVKKLNQEGFQGHKEWLAEINYLGQLQHPNLVKLIGYCLEDEHRALVYEFMPKGSVENHLFRRGSYFQPLSWTLRLKIALGAARGLAFLHSTEAKIIYRDFKTSNILLDTNYNAKLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAIDKNRPSGEHNLVEWAKPYLSNKRRVFRVMDSRLEGQYSLDRAQRTATLAFQCLAVDPKFRPTMNEVVRVLEQLKESEEKIKKNSDQKEHRVRGSGLGHAPASGKGSGDTPKIIAYPRPSASPLYAS* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3167 402 SUPERFAMILY Protein kinase-like (PK-like) 31 346 IPR011009 -
Lja3g3167 402 CDD STKc_IRAK 70 349 - -
Lja3g3167 402 Coils Coil 339 366 - -
Lja3g3167 402 Gene3D Transferase(Phosphotransferase) domain 1 150 372 - -
Lja3g3167 402 Gene3D Phosphorylase Kinase; domain 1 39 149 - -
Lja3g3167 402 MobiDBLite consensus disorder prediction 353 402 - -
Lja3g3167 402 PANTHER KINASE 1B 18 385 - -
Lja3g3167 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Lja3g3167 402 ProSiteProfiles Protein kinase domain profile. 64 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3167 402 MobiDBLite consensus disorder prediction 353 370 - -
Lja3g3167 402 PANTHER OS01G0588500 PROTEIN-RELATED 18 385 - -
Lja3g3167 402 ProSitePatterns Protein kinases ATP-binding region signature. 70 103 IPR017441 GO:0005524
Lja3g3167 402 MobiDBLite consensus disorder prediction 16 42 - -
Lja3g3167 402 Pfam Protein kinase domain 67 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3167 Lja-Chr3 60828756 60833500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3167 42 346 Glycoside Hydrolase AT3G07070 49.346 2.82e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja3g3167 Pkinase 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3167 - - gmx:100795058 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3167 3 60828756 60833500 Lja3g3167 3 60828756 60833500 ECH