Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3166 ATGGCTAAGAATGAAAAGCTTCGTGCTGAGAACCTACAGTACAAGGAAGCACTGAGGAATGCTAAGCACTTTCGTTGTGGAGGCTCATCTTCTGTTGGTGAAATGTCCTTTGAAGAGAAGCATTTGAGGCTTGAAAATGCTCTATTGAAAGAAAAGATTAAAAAGTTAAGAGAAATGACAGCAAGAATTGCAAAACAATCATCAACGACTTCCTTCTCTAACCTTCCACTGCGACTTCACACTCCAATATCCTCGCGCTCGTCTGATGTTGTCAACTATGTTCTGCAACCAAGCATGGCAATGCAAGTGCATGGTGGCAGCAGCGACCCTAAAAGATCAATTATCACAACTCCGTTTACCGAATCTGAAAAATCCTTAATTATGGAGCTTGTGGTTGGAGCTATGGACGAATTTACTAATATGGCTAACAGTGGACCACCTCTATGGATCCCCGAAATGAATGGTGATATTCTAAACCAACAAGAGTATGTTAAGGCTTTCCATGCAGGACTAAGTCGAACACGCATGGGGTTCAGATCTGAAGGCTCAAGGGAATCCATGATGGTCATCATGAATCGTAATAACCTTATTGAGATCCTTATGGATGTGATATCAGCAGAGTTCCAGACGCTCTCGCATCTTGTTCCTGCTCGTGATACTTATTTTTTAAGGTATTGTAAGCATCGCCCTGATGGGGCATGGGTTGTGGTTGATATTTCCTTAGACGATATGCGACCTGGTGCCGCCACAAGATGCAGAAGACGACCCTCTGGTTGTATGATTCAAGAATTTCCAAATGGTTTATCAAAGGTTACATGGATTGAACATGTAGAAGTTGAAGACAGAGAAGTGCATGATATCGTCAAACATCTATTTAATTCTGGTTTTGCCTTTGGAGCTAAGCGATGGATAAAAAACTTAGATAGATATTGTGAACGTCTTGCTTTCACAAAGAACACTATCATACCACAAATTAATGGAATAGCTTCTAAAGAAAGAAAAACCTTGATGAAGTTAGCAGAGAAAATTATGCAGAGCTATTGCAACTATGTTTGTGCTTCCCCACCACCTCATGTTTGGACAGTCCAGACAACCCCCACTGGTGTTGATGATGTGAGGGTGATGACCAGAAACCAAATTGATGCATCAGGCGCACTTATTGGTGTTGTCATCAGTGTTGCAACTTCTTTCTCGCTTCCAGTTCCTTCCAAAAGACTCTTTGATTTTCTTCAAAATGAAAACTCGAGGAACCCGTGGGATATTCTCACCAAAGGTTTTCTAGTTCAAGAACTAGCACACACAGAAAGTGGTATTGATCCTGGAAAGCTGAGCGGCGGGCCCATAAATGATGATGGACAAGGAGGGTGTCTTGGTACACTTGCATATCAAATATTGGTTGAAGCAACTCCAACACCACTAGCTCCTAGCTTAGTGTCCTCGTTGTGCACTTTAATGAAGTGCACAATTGACAAAATCCAAGTGGCAATGATGAGTGTCAGCACCTGA 1506 0.4203 MAKNEKLRAENLQYKEALRNAKHFRCGGSSSVGEMSFEEKHLRLENALLKEKIKKLREMTARIAKQSSTTSFSNLPLRLHTPISSRSSDVVNYVLQPSMAMQVHGGSSDPKRSIITTPFTESEKSLIMELVVGAMDEFTNMANSGPPLWIPEMNGDILNQQEYVKAFHAGLSRTRMGFRSEGSRESMMVIMNRNNLIEILMDVISAEFQTLSHLVPARDTYFLRYCKHRPDGAWVVVDISLDDMRPGAATRCRRRPSGCMIQEFPNGLSKVTWIEHVEVEDREVHDIVKHLFNSGFAFGAKRWIKNLDRYCERLAFTKNTIIPQINGIASKERKTLMKLAEKIMQSYCNYVCASPPPHVWTVQTTPTGVDDVRVMTRNQIDASGALIGVVISVATSFSLPVPSKRLFDFLQNENSRNPWDILTKGFLVQELAHTESGIDPGKLSGGPINDDGQGGCLGTLAYQILVEATPTPLAPSLVSSLCTLMKCTIDKIQVAMMSVST* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3166 501 CDD START_ArGLABRA2_like 124 312 - -
Lja3g3166 501 Pfam START domain 203 313 IPR002913 GO:0008289
Lja3g3166 501 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 202 442 IPR042160 -
Lja3g3166 501 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 2 203 IPR042160 -
Lja3g3166 501 Coils Coil 39 59 - -
Lja3g3166 501 SMART START_1 129 313 IPR002913 GO:0008289
Lja3g3166 501 ProSiteProfiles START domain profile. 120 316 IPR002913 GO:0008289
Lja3g3166 501 SUPERFAMILY Bet v1-like 121 314 - -
Lja3g3166 501 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-LIKE 2 203 - -
Lja3g3166 501 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-LIKE 202 442 - -
Lja3g3166 501 Gene3D - 191 320 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3166 Lja-Chr3 60806166 60808843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3166 2 441 Homeobox Transcription Factor Family AT4G04890 47.280 1.58e-140 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3166 K09338 - gmx:100782240 412.92