Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3164 ATGAAGGAGAGGCAACGTTGGTCATCTGAGGAGGATGCTTTACTACATGCTTATGTCCAACAATATGGTCCTAGGGAATGGAATCTCGTGTCTCAGCGCATGAACACACCTCTCAATAGGGATACAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATTAAAAAGGGATCTCTTACCAAAGAAGAGCAGCGTCTTGTGATCCTCCTTCAAGCAAATTACGGAAACAAATGGAAGAAGATCGCCGCTGAAGTCCCCGGTCGCACGGCGAAGCGATTAGGGAAGTGGTGGGAAGTCTACAAAGAGAAGCAGCAGAGAGAAAAAATTGAGATCAATGGGATAGTTAGCCCAATTAGTGATACCAAGTATGAACATATGCTAGAGGGTTTTGCTGAGAAACTAGTGAAAGAGCACACTTTACCATCATTTGCTATGGCTGCATCATCCAATGAGGCATTTCTGCATACCAATTCATCAGCTATGCTTCCTTCTTGGCTTTCCAATTATGATTCAACTTCAACACCTCCAAGTTCTATTTCCGTGACGTTGAGCCTTTCTCCCTCAACAGTGGCAACACCTAGAGGACTAGAGAACAATGCTCCTTTTGTTTTGAGGAATGTAACAGCACACAATGGATCTGTTCCTTCTTTCAGTGATCACATTCTCATGTCAGAATTGGTGGGATTCTCCAAAGAGTTGGAAGAGGGGCACCGCGCTTTGGCGGCACATAAGAAGGAGGCAGAGTGGAGACTAAGAAGGTTGGAGTTGCAGTTGGAGTCGGAGAAGGCGTGTCGAAGAAGGGAGACCGTGGAAGAGTTTGAGGCGAATATTAAAGCTCTTCAAGAAGAGCAGACAGCTGCTTTGAATAGAATTGAAAATGCATGCAGGGAACAGTTAGGTGGATTGAGGAGAGATGCTGAGAGCAAGGAGCAAAAATTGGCAGAGAAATGGACTTCAAAGCATTTGAGGCTTACTAGGTTATTAGAGCAAATGAAAATCCAGACCGGGGCTCCTTGA 1026 0.4513 MKERQRWSSEEDALLHAYVQQYGPREWNLVSQRMNTPLNRDTKSCLERWKNYLKPGIKKGSLTKEEQRLVILLQANYGNKWKKIAAEVPGRTAKRLGKWWEVYKEKQQREKIEINGIVSPISDTKYEHMLEGFAEKLVKEHTLPSFAMAASSNEAFLHTNSSAMLPSWLSNYDSTSTPPSSISVTLSLSPSTVATPRGLENNAPFVLRNVTAHNGSVPSFSDHILMSELVGFSKELEEGHRALAAHKKEAEWRLRRLELQLESEKACRRRETVEEFEANIKALQEEQTAALNRIENACREQLGGLRRDAESKEQKLAEKWTSKHLRLTRLLEQMKIQTGAP* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3164 341 Coils Coil 273 300 - -
Lja3g3164 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Lja3g3164 341 CDD SANT 6 53 IPR001005 -
Lja3g3164 341 SMART sant 58 106 IPR001005 -
Lja3g3164 341 SMART sant 3 55 IPR001005 -
Lja3g3164 341 Gene3D - 4 58 - -
Lja3g3164 341 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Lja3g3164 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Lja3g3164 341 PANTHER TRANSCRIPTION FACTOR AS1 1 338 IPR031055 GO:0005634|GO:0006351|GO:0010338
Lja3g3164 341 CDD SANT 63 104 IPR001005 -
Lja3g3164 341 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 338 - -
Lja3g3164 341 Pfam Myb-like DNA-binding domain 7 68 - -
Lja3g3164 341 Gene3D - 62 121 - -
Lja3g3164 341 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Lja3g3164 341 Coils Coil 240 267 - -
Lja3g3164 341 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3164 Lja-Chr3 60751373 60753807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3164 1 333 MYB Transcription Factor Family AT2G37630 59.615 5.01e-137 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g3164 Myb_DNA-bind_6 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3164 K09422 - gmx:100809813 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3164 3 60751373 60753807 Lja3g3164 3 60751373 60753807 ECH