Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3163 ATGAAGGAGAGGCAACGTTGGACATCTGAGGAGGATGCTCTATTATGTGCTTATGTCAAACAGTATGGTCCTAGAGAATGGCATCTCGTGTCTCAGCGCATGAACACGACTCTTCACAGGGATGCAAAGTCGTGTTTAGAAAGGTGGAAGAACTACCTGAAGCCCGGAATCAAGAAAGGATCTCTCACGGAGGAAGAGCAGCGCCTTGTCATCCGCCTTCAAGCAAAACACGGCAATAAGTGGAAGAAAATTGCTGCAGAAGTCCCAGGTCGAACCGCTAAGAGGCTAGGCAAGTGGTGGGAAGTTTTCAAAGAGAAACAGCAGAGAGAAAAACAGGAGATTAGCAAGTCAATCGGCCCGGTTGATGACAGCAAATACGATCACATTCTCGAGACTTTCGCGGAGAAGCTAGTGAAAGAGCATCCTTCACCATCATATCTCATGGCTGCTTCTAATGGACCCTTTCTCCACACTGACACACCTGCTGCCACCCCTGCATCAGCTTTGCTCCCTCCTTGGCTTTCAAATTCGAGCAACAATCCAGCCACAGCTGGGCAGCCACCTTCCCCTTCCGTGACATTAAGCCTCTCCCCCTCGACAGTGGCAGGACCACCACCTCCATGGAGAGGACTGGAGAATAATGCTCTTGCTATGGCGAACACAGCGCCCCACGGAACTGTTCCTGCTTTCAGCGATAACATGCTGGTATCTGAGTTAGTGGACTGCTGTAAGGAGTTGGAAGAAGTGCACGGCGCGTTGGCCGCACATAAGAAGGAGGCGACCTGGAGGCTGAGAAGGGTGGAGCTGCAGTTGGAGTCAGAGAAGGCGAATAGAAGGAGGGAGAAGATTGAAGAAACGGAAGCTAAGATTAAAGCTCTCAGGGAACAACAGAATGCTGCTTTGGAAAGAATTGAAGCAGAGTATAGAGAACAGTTAGCTGGATTGAGGAGAGATGCAGAAACCAAAGAACAAAAGCTGGCTGAGCAATGGACTGTAAAGCACTCGCGCCTTATGAAGTTTATGGAGCAGATAGGATGCAGATCCCGGATTGCAGAGACTAATGGAAGATGA 1071 0.4967 MKERQRWTSEEDALLCAYVKQYGPREWHLVSQRMNTTLHRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEISKSIGPVDDSKYDHILETFAEKLVKEHPSPSYLMAASNGPFLHTDTPAATPASALLPPWLSNSSNNPATAGQPPSPSVTLSLSPSTVAGPPPPWRGLENNALAMANTAPHGTVPAFSDNMLVSELVDCCKELEEVHGALAAHKKEATWRLRRVELQLESEKANRRREKIEETEAKIKALREQQNAALERIEAEYREQLAGLRRDAETKEQKLAEQWTVKHSRLMKFMEQIGCRSRIAETNGR* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3163 356 Pfam Myb-like DNA-binding domain 7 67 - -
Lja3g3163 356 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Lja3g3163 356 SMART sant 3 55 IPR001005 -
Lja3g3163 356 SMART sant 58 106 IPR001005 -
Lja3g3163 356 Gene3D - 62 119 - -
Lja3g3163 356 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Lja3g3163 356 Coils Coil 257 325 - -
Lja3g3163 356 CDD SANT 6 53 IPR001005 -
Lja3g3163 356 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 356 - -
Lja3g3163 356 MobiDBLite consensus disorder prediction 167 205 - -
Lja3g3163 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Lja3g3163 356 CDD SANT 63 104 IPR001005 -
Lja3g3163 356 PANTHER TRANSCRIPTION FACTOR AS1 1 356 IPR031055 GO:0005634|GO:0006351|GO:0010338
Lja3g3163 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Lja3g3163 356 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Lja3g3163 356 Gene3D - 4 58 - -
Lja3g3163 356 MobiDBLite consensus disorder prediction 170 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3163 Lja-Chr3 60745297 60748058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3163 1 347 MYB Transcription Factor Family AT2G37630 64.402 3.01e-154 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g3163 Myb_DNA-bind_6 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3163 K09422 - qsu:111993035 514.998