Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3157 ATGGGAAGGCATAGACAACAAGAGGAGCATTCTGAGTCATATTGGGAGAATCATCATCCAGAATGCAGCAGGGGACTTTTCCACATTATCAAGCACCATCCATTGCGTCCTTTAATGAAAAGACTTGCACACAAGAGGGATGGTGATGGTGAAAGAAGTGCTAATGCAGGAACTGTACTGGGACCAATCCCAGCTAACATGAAGAAGGACCTCAACCTTGCTGAGACAAGAAACTCAAATGTTGAACAACAAAAGGTGACACCGTTTTCTCCAGTAGCCAAAAACTCAGTAAAGAAGCAGATAAAAGCACTTTTCAAAGAGATATCTAAGAAGAGGAGCAGGCATCACAGAAGTTCATCATGTCCTATCATGTCTCATTCAAATCATGATTTGGAGCAATCAAATGTTGATAATAGTACAAGGATGAAAAGAGGATTACAATGTGGTGCTAAACCTTCTAGTGAGTATCATTGGGTCAGAAAGCATCAACCAGATAAAAAGGATTTTCTTGGACAAGAAATCAAAGAAGATATGGTAACATATGGAAGGAAACACTTCAACATCAACATGAAAAGTGACATATTGACATTTCTTCATGATCCTGTCTCTCCTACAATCTATCACTTCCATAAACAACAGATGCGTAGTGCGAAAATGGCATTAACCAGGTCTGCATCATTTCCTTTACCTGACTCGTCATCAGAAAGAGCGCGGTCGGAGGTTATAAGCAATGCTTCCCTTCCAAAAAGACAAGGAAGTTTGTGTTTTGGAAGTAAAACACAAAAACTAGTTCAATTGAAATCCTCAAAAGTATTTTGTGAAGAGGCAGCATTAGAATGGAGACTAAATGGAAATTCCAATATAAATGAAGCAACGATAGTAAGAAATGTGAACTCTTCTTCAGGATATTCCCAGTGTCAGAAAAGGAAAGAAATCAAACATGTTAAGAATCTCAAACAGAAAATAGAGCTTGTAACTGGAGAAAACAAAAGAGAAAAGCTTAGAGTTACAAATGATGCTATCATTGATAAACTTCCCCAAGGCCATGAGATATCAGATGAATTGAAGAAGGAAATTCTTAAGAAATTGACAGAACCAAGTTGTAATGAGAGCCATTCCAGGCACAGAATAAGAAGAATCTGGTCTCTTCCAGAACCACTAGAAAGTTATTCTAAACTCCATGAGAAAAGATTTAAGACAGAAGCAAGATTCCCTCAATCTAAGAAACCAAAGTTAAGAACAGAAAAGGCTCATTCACCATTTAGGATAAGGATTCTTTCATTACCTGATCTCCAATCTTTTTCCTATGGAGATGGCACTATGATTTCAGAGAGTGGTAGTTATCAGCAAAAGAGGCTTGACCTTAATGTACATTCAAGAAATCAAGTGCAGACACATGTGGAAAATTTAATTCAAGAAAACCTTGTCAGTGAAGGTGAAAATGATTTAGTGGTTAGAAGTAATATTATGGGATCAGGATCAGATTGTAGCAGTAAGATTAATGACAATTTGGGCATAATAGTTAATGACTTTGGAGACAGTAGTTTGAGAAAAGATGGCACTTCCAATGATCAAGATTCTGGGGCAATAAAAGAAGACAAGGCTGCAATAGCAGAATCAGATTCAAAATCAAAGCCAGGACCAGTTGATAGATTGGATAATGTGGCTGAGCAACAGGAGGCTAACATGGATCCCCTTGGGACCACAGAGAATGCACAAAAAGTGGAGATTCTAAACTATGAGATTCCTCAATTTCAAGTGGACACAAGACACAAAGATGAGTTTAATTATGTAAAATATGTACTTGAGGTATCAGGACTCACTGGTAATGATTGCCTTTCAGCATGGCATTCTAGTGACCAGCCAGTTGATCCATTACTCTATGAAGAAATGGAAGGGGATCCTGAATTCTGCACTGGTGGTCAGTGTAATCACTATGTGTTGTTTGATTTAATTAATGAGTCATTGTTGGATATTTATGGGAGGTCTTATAACTGCTGCTACAATCCTACTACACCATCTTCATCATCTCTTCCCCTAATTCATCCAATGCCAGGGTGTCACATTGTCTCAAAAGTGTGGGCTAGAATGAGCAGGTCACTGTGCTTGAGATTCAGAGGGGGGCAAACAGTGGATGATCATGTAGGTAGAGATCTAGCAAAGCTTGATGAGTTGGTGAACCTTCAGTTTTTTGCTGAGAGTGTGGGTTTGGAGGTGGAAGACTTGATTTTTCAAGAGCTCCTCAAGGAAATAGTAGGGGACTTAGCTTGA 2271 0.3875 MGRHRQQEEHSESYWENHHPECSRGLFHIIKHHPLRPLMKRLAHKRDGDGERSANAGTVLGPIPANMKKDLNLAETRNSNVEQQKVTPFSPVAKNSVKKQIKALFKEISKKRSRHHRSSSCPIMSHSNHDLEQSNVDNSTRMKRGLQCGAKPSSEYHWVRKHQPDKKDFLGQEIKEDMVTYGRKHFNINMKSDILTFLHDPVSPTIYHFHKQQMRSAKMALTRSASFPLPDSSSERARSEVISNASLPKRQGSLCFGSKTQKLVQLKSSKVFCEEAALEWRLNGNSNINEATIVRNVNSSSGYSQCQKRKEIKHVKNLKQKIELVTGENKREKLRVTNDAIIDKLPQGHEISDELKKEILKKLTEPSCNESHSRHRIRRIWSLPEPLESYSKLHEKRFKTEARFPQSKKPKLRTEKAHSPFRIRILSLPDLQSFSYGDGTMISESGSYQQKRLDLNVHSRNQVQTHVENLIQENLVSEGENDLVVRSNIMGSGSDCSSKINDNLGIIVNDFGDSSLRKDGTSNDQDSGAIKEDKAAIAESDSKSKPGPVDRLDNVAEQQEANMDPLGTTENAQKVEILNYEIPQFQVDTRHKDEFNYVKYVLEVSGLTGNDCLSAWHSSDQPVDPLLYEEMEGDPEFCTGGQCNHYVLFDLINESLLDIYGRSYNCCYNPTTPSSSSLPLIHPMPGCHIVSKVWARMSRSLCLRFRGGQTVDDHVGRDLAKLDELVNLQFFAESVGLEVEDLIFQELLKEIVGDLA* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3157 756 MobiDBLite consensus disorder prediction 108 135 - -
Lja3g3157 756 MobiDBLite consensus disorder prediction 515 550 - -
Lja3g3157 756 Pfam Domain of unknown function (DUF4378) 594 750 IPR025486 -
Lja3g3157 756 MobiDBLite consensus disorder prediction 120 135 - -
Lja3g3157 756 PANTHER PROTEIN TRM32 339 756 IPR044257 -
Lja3g3157 756 Coils Coil 315 335 - -
Lja3g3157 756 PANTHER DUF4378 DOMAIN PROTEIN 339 756 - -
Lja3g3157 756 MobiDBLite consensus disorder prediction 517 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3157 Lja-Chr3 60646336 60649972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3157 185 744 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 30.821 2.15e-54 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3157 - - lja:Lj0g3v0182349.1 1477.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3157 3 60646336 60649972 Lja3g3157 3 60646336 60649972 ECH