Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3141 ATGTATAGTCTTGGGAAGCTACGTGGTGCTTTTCAGTACCTGCATTTACAAAATAATGCACTGCTTCAATCTTTTGTCTTAACCAGCAACATGTCTTCCACTGCTGGCAAGGCAATTACTTGCAAAGCTGCAGTTGCATGGGAAGCAGGGAAGCCATTGAAGATTGAGAATGTGGAGGTTGCTCCGCCACAGGAGAAAGAAGTTCGGATCAAAGTCAAATATTCCTCACTTTGTCACACTGATCTTCATTTTTGGGAAGCCAAGGGTATGCCGCCAATGTTTCCACGCATATTTGGCCATGAAGCATCAGGTGTTGTGGAGAGTGTAGGTCATGGTGTATCAGACCTGAAGCCAGGGGATCATGTGCTTCCAGTGTTCATGGGAGAGTGTGGGGAATGCCCACATTGCAAGTCAGAGGATAGCAACATGTGTGATTTGCTGAGAATAGATCCAGTACGAGAAGTCATGATCAGTGATGGCAAGTCCAGGTTCTCCATTAACGGCAAGCCCGTAAGCCACTTTGTTGGCACATCTACTTTTAGCCAGTACACGGTTGCTCATTCTGGCTGTGTTGTAAAGATCGATCCCACTGCTCCTCTTGACAAAGTTTGCATCCTCAGTTGTGGCATCTCAACAGGATTAGGAGCAGTTCTGAATGTTGCTAAACCAAAGAAGGGCTCTTCCATTGCAATATTTGGGCTTGGAGCTGTTGGGTTAGCTGCAGTTGAAGGTGCACGAATTGCTGGGGCATCCAAGATTATTGGGGTTGACTTGAATCCTGACAGATATAAGGAAGCAAAGAAATTCGGACTAACTGACTTTGTAAATCCAAAAGACCATGAAAAACCAATTGACGAGGTCCTCAAAGAGATGACAAATGGTGGTGTTGATAGGAGCGTAGAATGCACTGGAAACGTCAATGCCATGATGTCTGCTTTAGATTCTGTTCATGATGGATGGGGTCTTGCTATCCTTGTTGGAGTGCCTAGCAGGGATACAGTTTTCAAAACTAGTCCTTATAGTTTCCTTGATGGAAAGACACTTACAGGTACTGCCTTTGGGGACTACAAGCCTAAGACAGGGCTTCCATCAGTGGTAGATTTGTTCATGAGCAATAAATTGGAGCTGGATAAGTTCATAACTCACAGAGTTCCTCTCTCAGAAATCAATAAGGCATTTGATTACATGATTAAGGGGCAAAGTTTAAGGACAATCATTGACATGGAAAACTAG 1233 0.4428 MYSLGKLRGAFQYLHLQNNALLQSFVLTSNMSSTAGKAITCKAAVAWEAGKPLKIENVEVAPPQEKEVRIKVKYSSLCHTDLHFWEAKGMPPMFPRIFGHEASGVVESVGHGVSDLKPGDHVLPVFMGECGECPHCKSEDSNMCDLLRIDPVREVMISDGKSRFSINGKPVSHFVGTSTFSQYTVAHSGCVVKIDPTAPLDKVCILSCGISTGLGAVLNVAKPKKGSSIAIFGLGAVGLAAVEGARIAGASKIIGVDLNPDRYKEAKKFGLTDFVNPKDHEKPIDEVLKEMTNGGVDRSVECTGNVNAMMSALDSVHDGWGLAILVGVPSRDTVFKTSPYSFLDGKTLTGTAFGDYKPKTGLPSVVDLFMSNKLELDKFITHRVPLSEINKAFDYMIKGQSLRTIIDMEN* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3141 410 SUPERFAMILY GroES-like 359 406 IPR011032 -
Lja3g3141 410 PANTHER ALCOHOL DEHYDROGENASE 1-LIKE 33 408 - -
Lja3g3141 410 Pfam Zinc-binding dehydrogenase 236 356 IPR013149 -
Lja3g3141 410 Pfam Alcohol dehydrogenase GroES-like domain 66 193 IPR013154 -
Lja3g3141 410 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 99 113 IPR002328 GO:0008270|GO:0016491
Lja3g3141 410 CDD alcohol_DH_plants 39 407 - -
Lja3g3141 410 Gene3D - 213 351 - -
Lja3g3141 410 PANTHER ALCOHOL DEHYDROGENASE 33 408 - -
Lja3g3141 410 SMART PKS_ER_names_mod 50 406 IPR020843 GO:0016491
Lja3g3141 410 SUPERFAMILY GroES-like 34 216 IPR011032 -
Lja3g3141 410 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 199 373 IPR036291 -
Lja3g3141 410 Gene3D - 49 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3141 Lja-Chr3 59992067 59995234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3141 31 410 Monolignol Biosynthesis Gene Families AT1G72680 22.977 2.63e-12 65.9