Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3127 ATGGACTCTCAACAGCTTTTCAGTTTCAATGCGACTAGTGCAGGATTACCTTACATGCCATCTTTTCCCACTATTCCATCGCTACCCAACTTGCTTGGATCCTTCAAAGCTGACAGAGGAAACTCACCCAATTCACCTTTTTCCACTCACTTCGATTCTGATGCTCTTTCTGCACTGAGTGACACCCAGGATCCACCCTGCTCAGGAGAATTCTTCTCTGGTCTCAGCTCCTCTTGTAACTCTTCACCGGAAACCAACCATTACATGCATAGATCAATCTCATCAGTGGTAAACAGTTTGCAGCTATATTCTGCTAGGAATACAAGTTCTCTTCTACAGAATACAAGTTGTAACCAGAAAATCAGACACGCATTGCTTGAACTTGAAACTGCTCTTATGGCCCCTGATGACAATGAAGTTACTACATCTAATACTTCATTTGCTGAAAGCACCAGGCCAATGCGATCTATGTCCTGGAGCCATGAACACCAGGGGTCACAATCACAATATATTCAACGTCAAGTATCACATGTTTCCAGCAGCACTCAGTCAAGAGAAGGTGTACATGTAGAGAAAAGGCAGAAGTTGATGGAGGAAGCAAAAGCATCGCCACAAGGGTTCCCATCAAGCAATGATTTGAAGCAATTGCTGATTGCATGTGCCAGAGCCATGTCTGAAAACAACATGAGAGACTTTGATCAACTAATAGAAAAGGCCAGAAGTGCTGTCTCTATCAACGGTGAGCCGATTCAGCGGCTCGGTGCTTACATGGTAGAAGGGCTTGTTGCAAGGAAGGAAGCATCAGGTAACAGCATCTACCATGCCCTTAACTGCAGGGAGCCTGAAGGGGAAGAATTGCTATCTTACATGCAATTGCTTTTTGAAATCTGCCCTTACTTAAAATTTGGTTACATGGCTGCCAATGGAGCCATTGCTGAAGCTTGCAGAAATGAGGACCGCATACACATCATAGACTTTCAGATTGCTCAGGGAAGTCAATGGATGACTCTTCTTCAAGCTCTTGCAGCAAGACCTGGTGGGGCACCCCATGTGAGGATCACCGGGATTGATGACCCTGTTTCGAAGTACGCTCGCGGAGATGGACTAGACATAGTTGGTAAAAGGTTGGCATTGATGTCTGAGAAGTTTGGCATACCAGTGGAGTTTCATGGAGTACCTGTTTTTGGTCCTGATGTGACAAGAGACATGCTTGATATCAGGCCAGGGGAGGCTCTGGCTGTGAATTTTCCCTTGCAGCTCCATCACACTGCTGATGAGAGCGTTGATGTGAGTAACCCAAGGGATGGGCTGTTGAGATTGGTGAAGTCACTTTCTCCCAAGGTGGTGACACTGGTGGAGCAGGAATCAAATACAAACACATCCCCTTTCTTCAACAGGTTCATGGAGACCTTGGATTACTACTTGGCGATCTTCGAGTCGATCGATGTCACCCTCGCGAGAAATAGCAAGGAGAGGATTAATGTGGAGCAGCATTGTCTGGCCCGGGATGTCGTGAATGTCATTGCTTGCGAAGGGAAGGAAAGGGTAGAGCGGCATGAACTGTTCGGTAAGTGGAAGTCTAGGTTAACAATGGCTGGGTTTCGTCAATCTCCTTTGAGTTCTTATGTGAATTCTGTGATAAAAAACCTTCTGAGATGCTATTCAGAACACTATACACTAATTGAGAAAGATGGTGCCATGCTGTTGGGGTGGAAGAACAGAAGTTTGATATCAGCTTCAGCATGGCATTGA 1752 0.4572 MDSQQLFSFNATSAGLPYMPSFPTIPSLPNLLGSFKADRGNSPNSPFSTHFDSDALSALSDTQDPPCSGEFFSGLSSSCNSSPETNHYMHRSISSVVNSLQLYSARNTSSLLQNTSCNQKIRHALLELETALMAPDDNEVTTSNTSFAESTRPMRSMSWSHEHQGSQSQYIQRQVSHVSSSTQSREGVHVEKRQKLMEEAKASPQGFPSSNDLKQLLIACARAMSENNMRDFDQLIEKARSAVSINGEPIQRLGAYMVEGLVARKEASGNSIYHALNCREPEGEELLSYMQLLFEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLDIVGKRLALMSEKFGIPVEFHGVPVFGPDVTRDMLDIRPGEALAVNFPLQLHHTADESVDVSNPRDGLLRLVKSLSPKVVTLVEQESNTNTSPFFNRFMETLDYYLAIFESIDVTLARNSKERINVEQHCLARDVVNVIACEGKERVERHELFGKWKSRLTMAGFRQSPLSSYVNSVIKNLLRCYSEHYTLIEKDGAMLLGWKNRSLISASAWH* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3127 583 Pfam GRAS domain family 213 582 IPR005202 -
Lja3g3127 583 ProSiteProfiles GRAS family profile. 204 583 IPR005202 -
Lja3g3127 583 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 24 583 IPR005202 -
Lja3g3127 583 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 24 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3127 Lja-Chr3 59801543 59805569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3127 209 582 GRAS Transcription Factor Family AT5G48150 65.067 8.46e-176 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g3127 GRAS 1.2e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3127 - - adu:107462432 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3127 3 59801543 59805569 Lja3g3127 3 59801543 59805569 PCT