Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3124 ATGAAAGAGGAATCTACTGGATTAATTATTGGGATTTCCATTGGTGTGGTGATTGGAGTTGTTTTGGCAATTTCTGCATTGTTCTGTTTTAGATACCATAGGAAGCGTTCGCAGATCGGCAATAGCAGTTCCCGGCGAGCCGCTACCATACCTATCCGCGCAAACGGTGCTGATTCATGTACCATTCTATCAGACTCAACCTTAGGTCCAGATTCGCCTGTAAGGTCTGGACGCAATGGCATGTCCTTCTGGCTTGATGGTATCAAGAAGAGTAACATGGTTTCTGCATCTGGAATACCAGAATATTCATACAAGGACTTGCAAAAGGCAACATGTAACTTCACAACACTCATAGGACATGGTGCGTTTGGTCCGGTTTATAAAGCTCAGATGTCTACTGGTGAGATTGTTGCGGTTAAAGTGCTTGCTACTGATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGGTTATGTTGTTGGGAAGGTTGCACCATAGAAACCTGGTCAATTTGGTTGGGTATTGCGCGGAAAAGGGGCAACGTATGCTTGTATATGTCTACATGAGTAAAGGAAGCTTGGCATCCCACTTGTACAGTGAAGAGAACGAGACACTAGGCTGGGATTTGAGGGTTCATATAGCTTTAGATGTAGCAAGAGGCATTGAGTATCTTCATGATGGGGCCGTTCCTCCTGTTATTCATCGAGATATCAAATCTTCCAATATTCTCTTGGACCAGTCCATGCGAGCCAGGGTAGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACAAGCAGCTATTCGGGGCACCTTCGGCTATCTTGACCCTGAGTATATTTCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGTGTGTTGCTCTTTGAACTTATAGCTGGACGAAATCCTCAGCAGGGTCTTATGGAATATGTTGAGCTTGCAGCAATGAACACTGAGGGTAAAGTTGGTTGGGAGGAGATTGTTGATTCTAAACTTGAAGGGAAATGTGATTTCCAAGAGCTCAATGAAGTGGCAGCACTTGCCTACAAATGCATCAATCGCGCCCCGAGGAAGCGTCCTTCCATGAGGGACATAGTGCAAGTGTTGACACGCATCCTTAAATCAAGACACCACAGAAATCACAAGAAGTCTCTCTCAGCCACAGGAGACGAAGTTGCCATTGATGTTGATCAGCTAGAAACCAAGACTTCTGCTACTGACCACAGAAGAGATGAGTCTATTGATAGTGCAGCTGACATGTGTGATGTATAG 1287 0.4444 MKEESTGLIIGISIGVVIGVVLAISALFCFRYHRKRSQIGNSSSRRAATIPIRANGADSCTILSDSTLGPDSPVRSGRNGMSFWLDGIKKSNMVSASGIPEYSYKDLQKATCNFTTLIGHGAFGPVYKAQMSTGEIVAVKVLATDSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQRMLVYVYMSKGSLASHLYSEENETLGWDLRVHIALDVARGIEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKQAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSKLEGKCDFQELNEVAALAYKCINRAPRKRPSMRDIVQVLTRILKSRHHRNHKKSLSATGDEVAIDVDQLETKTSATDHRRDESIDSAADMCDV* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3124 428 PANTHER OS01G0253100 PROTEIN 5 403 IPR045271 GO:0004714|GO:0006468
Lja3g3124 428 CDD STKc_IRAK 118 377 - -
Lja3g3124 428 Gene3D Phosphorylase Kinase; domain 1 85 187 - -
Lja3g3124 428 SUPERFAMILY Protein kinase-like (PK-like) 100 387 IPR011009 -
Lja3g3124 428 Pfam Protein tyrosine and serine/threonine kinase 114 374 IPR001245 GO:0004672|GO:0006468
Lja3g3124 428 Gene3D Transferase(Phosphotransferase) domain 1 188 400 - -
Lja3g3124 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Lja3g3124 428 MobiDBLite consensus disorder prediction 408 422 - -
Lja3g3124 428 ProSiteProfiles Protein kinase domain profile. 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3124 428 SMART serkin_6 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3124 428 MobiDBLite consensus disorder prediction 408 428 - -
Lja3g3124 428 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 5 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3124 Lja-Chr3 59662160 59665721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3124 24 374 Glycoside Hydrolase AT3G07070 39.459 9.70e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Lja3g3124 PK_Tyr_Ser-Thr 1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3124 - - gmx:100799586 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3124 3 59662160 59665721 Lja3g3124 3 59662160 59665721 PCT