Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3120 ATGCCAACTGTGTGGTTCTCCCTGAAGAGGTCTCTACACTGCAAATCAGAGCCAACAGATGTTCATGTTCCAAAGTCAAGGAAGCATTTGGCCACAATCTTGACTAAAAGGGCAGGGACAGGGAGGTCAGGGTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCATTTAGAGAAGCCACCAAGTTGCAGCCCGAGGTCCATAGGGAGCAGTGAGTTCCTCAACCCAATAACCCATGAAGTCATTTTGAGCAACTCAAGGTGTGAGCTGAAAATCACTGGCTATGGAGGATTCCAAGAAGGAGGGGTTGCCAGTGATGGTAACAACAATGGTGGTGAAACTGGTGATTCAACCTTTGTAGGTACTCTAAGGCCTGGGACTCCTGGCCCTGGAGGGCACCCTACAATGCACTATTTCAACCCTTCTTATAAGACACCAGCCACTCCTCCAAGGAAGTTATCACCTTTCCTTTCATCAGATAAAGAAGGGTCTGGCTTCCATGGTGCTGGATTTCATTCTAGCCACAGGTTGTCCCTTGAGACAGATTCTAATGGGCCTTGTAATGTGACTTGCCACAAATGTGGAGAGCAATTTAGCAAATGGGAAGCTGCTGAAGCTCATCATCTCTCCAAGCATGCTGTTACTGAACTTGTCGAAGGTGATTCATCAAGAAAAATAGTGGAGATAATATGCAGGACGAGCTGGTTAAAGTCTGAGAACCACTGTGGTCGAATTGAAAGAGTTTTGAAAGTCCATAACATGCAGAAGACACTGGCTAGGTTTGAAGAGTACAGAGAGATGGTGAAAATCAAAGCCAGCAAACTCCAGAAGAAGCATCCTAGGTGTTTGGCTGATGGGAATGAGCTTTTGAGGTTCTATGGCACCACTCTTGCATGCTCTCTTGGTCTCAATGGTTCTTCCAGCCTGTGCCAATATGAAAGATGCTGTGTTTGTAGAATTATCAGAAATGGGTTTTCTTCCAACAAGGAGGAGCTCAAGGGTGGAATTGGTGTTTTCACTACTTCCACAAGTGGAAGGGCTTTTGAATCTATTGAGATTTTAGGCCATGACCCATCACTGAGAAAAGCATTGATAGTATGCAGAGTCATTGCTGGCAGGGTCCATAGACCTCTGGAAAACATTCAGGAAATGGCAGGACAGACAGGGTTTGATTCATTGGCTGGCAAAGTTGGTCTCTATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTCGTTTGCAAACCCTGA 1293 0.4548 MPTVWFSLKRSLHCKSEPTDVHVPKSRKHLATILTKRAGTGRSGCSRSIANLKDVIHGSKRHLEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGGVASDGNNNGGETGDSTFVGTLRPGTPGPGGHPTMHYFNPSYKTPATPPRKLSPFLSSDKEGSGFHGAGFHSSHRLSLETDSNGPCNVTCHKCGEQFSKWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENHCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTLACSLGLNGSSSLCQYERCCVCRIIRNGFSSNKEELKGGIGVFTTSTSGRAFESIEILGHDPSLRKALIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVVCKP* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3120 430 ProSitePatterns Zinc finger C2H2 type domain signature. 197 218 IPR013087 -
Lja3g3120 430 SUPERFAMILY ADP-ribosylation 220 429 - -
Lja3g3120 430 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 430 - -
Lja3g3120 430 Gene3D - 210 429 - -
Lja3g3120 430 PANTHER - 2 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3120 Lja-Chr3 59600046 59602638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3120 1 430 C2H2 Transcription Factor Family AT5G54630 67.672 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g3120 None None None