Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3117 ATGCAAAATCATTTTCAAGGAAAAAAGTTTTGCAATTTACTTATTCTATTTTTGAACAAGTATTACGAACTTTCAAAAAAAAATAACGTAAACCTTCCTTCTTTGGGGAAGAGGTCAAGATCAAGACAATCATCATGGGAAAGTTATGTTGTAAGACCATTAGATGAAATCAAAGTAGCAACAGAAGGAAAAAGAATTCGTGCTTTGGAGGCTGCAGAGGCACTCCAAATGAATTTAAAAACTTCGCATCCATCATTCGTCAAGTCAACGGTTCGGTCTCATGTTTATAGCTGTTTTTGGTTGGGTCTTCCTTCTAAATTTTGTAAGGAACATCTTCCGAAAACTCTGAATGACATGATTTTAGAGGATGAAAATGACTCAAAATATGAGGCTGTTTACATTGGGAAAAGAAGTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGATCATAAGCTGGATGATGGTGATGCACTTGTTTTCGAATTGATTGAAGCAGCGAAATTTAAGGTTTATATTGTGAGAGCATTTCCAAATTCAGTTGAAAAAGAGGATACTTTGGAGGAAGAAGGAACCATGAGAGGAAAAAAAGCTGCTAGTAATGGAGAATCAGAATCAAAGAAGTCAAAAAAACCAAAACAAGCCATTGTACATGAACATAAGGAACCACCAAAGGCAAAGCTTCCTGTTATTGCTGATTTAAAAGGGGTAGCACAACTTGAAACTGTGAAACCAAAGGCAGCTACAAAGCTCTCAAACAAGACAAGGAACTACAAAAAAGACATTGCACGTGAAATTGGTGACTCAGGTATTACTGAACAACATCTTTTGGAAATTAATGCTCTCAAACTAAGAGAGACTAACTTGAGCAACAAGGAAGAACTTGTTCAAGATGCTGATGGTGGGTTAGAGAAGGGTGAGCCAGTTGAAGTAGCAAGCAAAAAGCCTAGGAAAAAACCAGCTCCCAAGTTGTTCAGAAAGAAAGTATAG 990 0.3737 MQNHFQGKKFCNLLILFLNKYYELSKKNNVNLPSLGKRSRSRQSSWESYVVRPLDEIKVATEGKRIRALEAAEALQMNLKTSHPSFVKSTVRSHVYSCFWLGLPSKFCKEHLPKTLNDMILEDENDSKYEAVYIGKRSGLSGGWRAFALDHKLDDGDALVFELIEAAKFKVYIVRAFPNSVEKEDTLEEEGTMRGKKAASNGESESKKSKKPKQAIVHEHKEPPKAKLPVIADLKGVAQLETVKPKAATKLSNKTRNYKKDIAREIGDSGITEQHLLEINALKLRETNLSNKEELVQDADGGLEKGEPVEVASKKPRKKPAPKLFRKKV* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3117 329 SMART B3_2 86 180 IPR003340 GO:0003677
Lja3g3117 329 MobiDBLite consensus disorder prediction 184 224 - -
Lja3g3117 329 Pfam B3 DNA binding domain 86 175 IPR003340 GO:0003677
Lja3g3117 329 ProSiteProfiles B3 DNA-binding domain profile. 86 177 IPR003340 GO:0003677
Lja3g3117 329 Gene3D - 60 177 IPR015300 -
Lja3g3117 329 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 29 190 IPR044837 -
Lja3g3117 329 MobiDBLite consensus disorder prediction 296 329 - -
Lja3g3117 329 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 29 190 - -
Lja3g3117 329 SUPERFAMILY DNA-binding pseudobarrel domain 80 175 IPR015300 -
Lja3g3117 329 CDD B3_DNA 84 175 IPR003340 GO:0003677
Lja3g3117 329 MobiDBLite consensus disorder prediction 296 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3117 Lja-Chr3 59490151 59496627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3117 40 180 B3 DNA Binding Superfamily AT5G58280 59.155 1.65e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja3g3117 B3 4.6e-16 CL0405