Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3116 ATGACAATTCAACGTTACATGGGGATCACAAAGGCTTGCTTTTGCATTGTTTTGGTTCTTGGCATTGTTGTGGTCTTCAGCATTGAAGAAAAGAAAGAATCACATGAAGAATTCCCTAGCCAATTTCTTGATTCTGCTTCTGGAATGTTAGATGAGGACACGACAAAGGTATTGATCACTTGCTTGGAAGATTTGATTCATTTAAAGAAAGAAATTGGAGAGCATGATTATTGCATCCCACAAGAATCACCCAGTTGCACTGGTGAAATTAGTTCAGAAATTGGATCAGTATCAAGAGAAAACATCCAAAAGTTGATTAATAATTGCCATCCTCAGTTGAAGGAAAACTTTGTTCATTGTTTGAGAAAAAACAATTTTCCATTCCATATCCCTCAGGAAGAGGATGACTCCACATTTTCTTCAAGAAGATATCTGGGTCATGTCTTGCCTCAGCATGTATCAGAAAAAGAAGGAGGATCATCTGATAAACGACAGAAAAAAAAGTCGCGCAAGGCCGCTAACAATAAATATCACAAAAAGGCATTTTATCGCGCCATAGCTATAACTGCATTGGTGACATTTATAGCTGCATCACTGCTCTTTTTATGTTGTTGTCGGTGCTGTGGGAGTGGCAAAGTAAAGCAAACTGATGAGAGGCCCCTTCTCAGCATGAGCATGGGTGACTACTCCTCTATTGGTTCTTCTTCCTACAATAACCCATATAAAAATTCAATGAAAGAGGAAAAACTTGGGGTTCAGTCATCAAGTAATAATTTGGTTGATAATAAGAACTCAACACATGAAAGTCAAGAAGCAGGAGTTGGTCGTGTTGCTTCAAGGCCATCATTTGATCTGAAACCTCCTCCTGGAAGGGTAGGAAATACAATGCCTCCTTTAAAACCTCCTCCTGGAAGGCTTGATCCTCTTCCCCCTGAACCACCAACATCTAAGCCTTCTGATAATGCCACTGCTCCTCCTCCTCCCTCTGCTCCCCCTGCACCACCAAGGCCTGGCAGTGGTATCACTCCACCTCCTGCACCCCCACCGCCTGGTGGCGGTGGCCCTCGGCCTCCTCCACCTCCACCACCTGGTGTCAAACCCGGTCCTCGCCCACCACCACCTCCTAAGGCTGGTATAGGTCCTCCAAGAGCTCCTCCCCGAATTGGACCTAAGGTGGCTAAACCTTTAGGTAGTGGACCAAAGGCTCAAGGGAATGTTGGAGCTGCTTCAGAAGATGAAGGTGATGATGCTCCTAAAGCCAAGTTAAAGCCATTTTTCTGGGATAAGGTTCAAGCCAACTCAGATCAAACAATGGTTTGGAATCAGCTCAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAGACGCTTTTTGGCTATAGTGCTGCCCCGCCGCAGAAAAACAATGGCTCACAGAAGAAAGAGTCTTCCTCACATGATCAATCACCGCAGTGGATCCAGATCATTGACTCAAAGAAAGCACAAAACTTATCTATTCTGCTACGAGCATTGAATATGACACTGGAAGAAGTTTCTGATGCACTTCTTGAAGGAAATGAGCTCCCTCCAGAGTTCCTCCAAACCCTCATGAAGATGGCACCAACATCAGAGGAAGAACTTAAGCTTAGACTTTTCACTGGTGACATTTCCCAACTTGGGCCTGCTGAGCGGTTCCTGAAAGCCATGGTTGAGATTCCATTTGCTTTTAAACGAATGGAAGCACTTCTTTTCATGGGTAATCTTAAAGAGGAACTCACTGCTACCCGGGACTCTTTTGCAATTTTAGAGGTTGCCTGTAAGGAACTAAGAAGCAGCAGATTGTTCCTCAAGCTTCTTGAAGCAGTTCTCAAAACCGGCAACCGAATGAATGATGGGACATTCCGTGGGGGAGCACAAGCATTCAAACTTGACACACTACTGAAATTGTCTGATGTAAAAGGAGTAGATGGCAAGACTACTCTTTTGCACTTTGTTGTGCAGGAGATAATCCGCACTGAGGGCATAAGAGCTGCACGGGTGATAAAAGAGAGCAATAGTTTCTCCAGCATAAAAACCGATGACCTCCTTGAGGACGTTTCTCAAGAATCAGAAGAACACTATCGCGAACTCGGTCTTCAAGTAGTTTCACGTTTGAGCAGCGAGCTTGAGAATGTTAAGAAAGCAGCAGCTCTTGATGCTGATAATTTAACAGGAACAACTGCTAGACTAGGCCATGGTCTCATAAAAACTAGAGAATTGGTAAACAAAGACACGAATAGCATAGATCATGATAGAGGGTTTCATGAGACAGTTAAGGGTTTTGTGGAGAAAGCCGAGGTTGATGTCACGAGTCTGCTGGAAGAAGAGAAGAAAATCATGGCTCTAGTGAAGAGCACTGGTGACTACTTTCATGGGAATTCTGGGAGGGATGAAGGGTTAAGATTGTTTGTTATAGTGCGTGACTTCTTAATCATGTTGGATAAGGTGTGTAAGGAGATTCAAAGAGCACCAAAGAAGCCAGTAAAAACTGTGAAACAAGATAGTTCTAAAGGGTCTTCTACCTCAGAAACTCGTCCACCTCCTCCTGATATTCGCCAGAGGCTTTTTCCAGCAGTTGTAGATAGGAGGGCGGATGACTTTAGTAGTTCAGATGATGAGAGTCCATAG 2649 0.4383 MTIQRYMGITKACFCIVLVLGIVVVFSIEEKKESHEEFPSQFLDSASGMLDEDTTKVLITCLEDLIHLKKEIGEHDYCIPQESPSCTGEISSEIGSVSRENIQKLINNCHPQLKENFVHCLRKNNFPFHIPQEEDDSTFSSRRYLGHVLPQHVSEKEGGSSDKRQKKKSRKAANNKYHKKAFYRAIAITALVTFIAASLLFLCCCRCCGSGKVKQTDERPLLSMSMGDYSSIGSSSYNNPYKNSMKEEKLGVQSSSNNLVDNKNSTHESQEAGVGRVASRPSFDLKPPPGRVGNTMPPLKPPPGRLDPLPPEPPTSKPSDNATAPPPPSAPPAPPRPGSGITPPPAPPPPGGGGPRPPPPPPPGVKPGPRPPPPPKAGIGPPRAPPRIGPKVAKPLGSGPKAQGNVGAASEDEGDDAPKAKLKPFFWDKVQANSDQTMVWNQLKAGSFQFNEEMMETLFGYSAAPPQKNNGSQKKESSSHDQSPQWIQIIDSKKAQNLSILLRALNMTLEEVSDALLEGNELPPEFLQTLMKMAPTSEEELKLRLFTGDISQLGPAERFLKAMVEIPFAFKRMEALLFMGNLKEELTATRDSFAILEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRTEGIRAARVIKESNSFSSIKTDDLLEDVSQESEEHYRELGLQVVSRLSSELENVKKAAALDADNLTGTTARLGHGLIKTRELVNKDTNSIDHDRGFHETVKGFVEKAEVDVTSLLEEEKKIMALVKSTGDYFHGNSGRDEGLRLFVIVRDFLIMLDKVCKEIQRAPKKPVKTVKQDSSKGSSTSETRPPPPDIRQRLFPAVVDRRADDFSSSDDESP* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3116 882 MobiDBLite consensus disorder prediction 238 272 - -
Lja3g3116 882 PANTHER FORMIN-RELATED 326 879 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lja3g3116 882 MobiDBLite consensus disorder prediction 152 173 - -
Lja3g3116 882 PANTHER FORMIN-LIKE PROTEIN 326 879 - -
Lja3g3116 882 PANTHER FORMIN-RELATED 1 150 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lja3g3116 882 MobiDBLite consensus disorder prediction 238 419 - -
Lja3g3116 882 Pfam Formin Homology 2 Domain 416 820 IPR015425 -
Lja3g3116 882 MobiDBLite consensus disorder prediction 840 854 - -
Lja3g3116 882 SUPERFAMILY Formin homology 2 domain (FH2 domain) 358 834 - -
Lja3g3116 882 MobiDBLite consensus disorder prediction 291 389 - -
Lja3g3116 882 ProSiteProfiles Formin homology-2 (FH2) domain profile. 412 846 IPR015425 -
Lja3g3116 882 PANTHER FORMIN-RELATED 171 374 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lja3g3116 882 MobiDBLite consensus disorder prediction 462 484 - -
Lja3g3116 882 MobiDBLite consensus disorder prediction 830 863 - -
Lja3g3116 882 SMART it6_source 412 835 IPR015425 -
Lja3g3116 882 Gene3D Formin, FH2 domain 411 832 IPR042201 -
Lja3g3116 882 PANTHER FORMIN-LIKE PROTEIN 171 374 - -
Lja3g3116 882 PANTHER FORMIN-LIKE PROTEIN 1 150 - -
Lja3g3116 882 MobiDBLite consensus disorder prediction 463 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3116 Lja-Chr3 59484772 59488883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3116 370 827 FH2 protein (formin) Gene Family AT3G25500 48.172 6.61e-124 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3116 - - gmx:100792872 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3116 3 59484772 59488883 Lja3g3116 3 59484772 59488883 PCT