Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3112 ATGGACACAAAACATTCAAGTGAGAGAACTTGTGCCTTGCTGGTCGGAGATACAGTTTCCATGGATTCTAACTGCTCATCATCTTCTGGCAGGTACTATAAACATGATGTGTTCCTCAGTTTTAAAGGTGCTGACACCCGCAACACTTTTGTGGACCATCTTTACACTCATCTCACCAGAAAAGGCATTTTCACCTTCAAGGATGACACAAGTCTCCGGAAAGGAAAAGCCATTTCACCACAACTCGTGCAAGCCATTAAAGACTCGCGGGTTTCTATCGTTATCTTCTCTAAAGACTATGCTAAGTCTACATGGTGTTTGGATGAGATGGCCACTATTGCTGATTGCAGTAAAGAATTGAAACAAACCGTTTTCCCTGTTTTCTATGATGTCGACCCATCTCATTTACGAAAGCAAGATGGGGTGTGCCATATTGCCTTTGCTTCACACTTTAGGAAGTTCAAAGATGATCCGGGCAAGGTTTACCGGTGGCAGAGAGCTATGACAAGTTTGGCTAGTTCAGCTGGTTGGGATGTCAGGAACAAGCCAGAGTTTGGAGAGATTGAAAAAATTGTTCAGGCAGTAATAAGAGCATTGGATCATAAATTTTCTAGTTTTACTAATGATCTGATTGGGATACAGCCTCATGTGAAAGAATTAGAAGACCTTCTAAAATTGAGTTCAGAGCATGATGATGATATTCGAGTCTTAGGGATTTGGGGGATGGGTGGAATAGGAAAGACCACTCATGCTACTGTCTTGTATGACAGAATTTCTCATCAATTTGATGCTCCTTGTTTTGTTGAGAACGTGAGCAAACTTTATAGGGATGGTGGTGCTATTGCTGTACAGAAACAAATTCTTCGGCAAACTCTAGAAGAGAAAAATCTAGACACTTGCAGTACTTGTGAAATATCCAGAATTATAACAAATAGGCTACACAGCACTGTTAAGATCCTTGTAGTTCTCGACAATGTTGATCAGTTAGAGCAATTGCAAGAGTTGGCTATAAATCCTAAATTGCTTTGTGCTGGAAGTAGAATAATCATAACTACTAGGGATGAGCATATTCTGAGAGTATATGGAGCTGATAAAGTTCACCAGGTTACACTATTGAATAATAATGATGCTCGTGAACTTTTTTGTAGAAGGGCCTTCAAAAGTGAAGACCAAAGTAGTACTTGTATGGAGTTGATTCCTGATGTACTAAAATATGCTCAATGTCTTCCATTAGCTATTAGAGTAATAGGTTCTTTCTTGTGCACCCGAGACGCTATCCAGTGGAGAGATGCCTTGGATAGATTGGAGAATAGTCCACACAAGGAAATTATGGATGTGCTCCAGATAAGTGTTGATGGACTACAACATGAGGAGAAAGAAATGTTTCTGCACATTGCTTGTTTCTTCAAAGGGGAAAGGGTGGATTATGTAAAGCGAATTTTAGATGCTTGTGGATTACACCCTCACATTGGAATACAAAGTTTGATTGAAAAATCACTCATAACCATTAGAAACCAAGAAATTCATATGCATGAAATGTTACAAGAATTGGGGAAGAAAATTGTTCGGCACCAATGTCCCAGACAGCCTGGATCGTGGAGTAGACTGTGGCTTTACAAAGATTTCTACAATGTCTTGGAGACAGAAACGGGAACAGACAATGTTGAAGGCATAGTGCTAGACCAAAAAGAAAATGTCTCTAAATGCAAGGCCGAAGGATTGTCAAAAATGAAGAGTCTTAGATTGCTGATATTATATCATAGGAATTTTTCAGGAAGACTCACTTTCCTTTCTAACAATTTAGAATACCTTTTGTGGCATGATTACCCTTTTCTTATTCTGCCATCAACATTTGAGCCATATTATCTTGTGGAATTGAATATGCCTCATAGTAGCATCCAACGACTTTGGAAGGGCACCAAGCACCTCCCCTGTCTGAGAAGGGTGGATATGAGCAACTCTAAGTATCTTTTGGAGACTCCAAGTTTTGAAGGGATTCCAAATCTTGAGCGGTTAGATCTTACAGGATGCACAAACTTATTACATGTCCATCCATCCATTGGAGTTCTTACAAAACTTGCTTTCTTGAGTTTGAGAAACTGTAGAAGTTTAATCAGCCTTGATTTTGGTGATGGATCTAATCTATGTTCTCTAAAAGTGTTACACCTATCTGGTTGCACAAAACTTAAACACACCCCATATTTTACTGGCATCTCAAATCTGGAGTACCTTGATATGGATCAATGCAGAAGTTTATATGTGGTTCATGAATCAATTGGGGCTCTTGTGAAACTTAGACTCTTGAGTTTGAGAGATTGCACAAATCTTGTGACTATACCCAGCAGTGTTAATACCATGACATCTCTCATAACTCTAGATCTATGTGGCTGCTGTAAACTTATGAACATGCCCTTGAGATGGATTTCCAACCCTTCTTTTCAACTGAGGTCTTTGATTTGTTTGAACCTGAGTTTTTGCAATCTTCCCAATGTCTCTGATGCTATTGGAGAGTTAAGGTGTTTAGCAAGACTAAATCTACAAGGAAACAATTTTGTTTCACTACCACCTACCACTCAAAGGCTTTCTAGTCTAGCATATTTAAACTTGGCCCATTGCCATAAGCTTGAATGTTTGCCATGGCTACCACCAGAAAGTGCTTTATCGGTAGGAAAATATTTTAAAACAGAATCCGGATCTCGTGATCATAGGTCAGGATTATACATTTTTGACTGCCCCAAGGTTGTCTATAATGATCTGCTATACTTCAACTTTGAATTGCAATGGCCCTTAAGGCTAGTTACGGAACCTCGTCACTTTCGGTGTGGCTTTGACATTGTTGTTCCCTGGAATAACGAAACAACACCAGTATGGTTCAATCATCAATTTGATGGGGGCTCAACAATAAGGATAATGAACTCTAGTGTTGATGATAGCTGCATAGGCTTTGCCTTTTGTGTAGTATTTAAGAAGGTAAAAAGTGGTCCTTCGATTGCTAGTAGTTCTTCACATGATCCATGTTCACCACAATTGCCACACCCTTTTTATCTTTCTTTTGAAAGTGACCATACCGAAGAACGTTTTGACATGGCACTTAATTTGGAACCAGAGAGTATTGATGGGAGAAAATATCTTTGGATAATCTATATATCTCGGCAACACTGCCACTTTTTGAAAACGGGAGCACACATCACATTTAAAGCCTACCCAAGTTTGATGATAAAGAAATGGGGGTTGAACATGCTAATTGCGAAAAATGGAGAGGCATTAGAAAGGAGATCTCCAAGACTATGTTCCAAGAGGCTTGCCATTGATAATGTAGAAAAAAGTAATAGCAACTTTGGGCCAAAAATCCAACTTCCATACAATTGGTTCATTTCTGAAGAAGATGAAGTAGAAAATGATCAAGCCGAGGGGAAAGAAAATAATCTCTCTAATCTGGTAAAACTGCCTACATTAGATCCACCAAGTGGTGTCTGGTCCCTTTCTGGACCTCGCGCATAG 3501 0.3939 MDTKHSSERTCALLVGDTVSMDSNCSSSSGRYYKHDVFLSFKGADTRNTFVDHLYTHLTRKGIFTFKDDTSLRKGKAISPQLVQAIKDSRVSIVIFSKDYAKSTWCLDEMATIADCSKELKQTVFPVFYDVDPSHLRKQDGVCHIAFASHFRKFKDDPGKVYRWQRAMTSLASSAGWDVRNKPEFGEIEKIVQAVIRALDHKFSSFTNDLIGIQPHVKELEDLLKLSSEHDDDIRVLGIWGMGGIGKTTHATVLYDRISHQFDAPCFVENVSKLYRDGGAIAVQKQILRQTLEEKNLDTCSTCEISRIITNRLHSTVKILVVLDNVDQLEQLQELAINPKLLCAGSRIIITTRDEHILRVYGADKVHQVTLLNNNDARELFCRRAFKSEDQSSTCMELIPDVLKYAQCLPLAIRVIGSFLCTRDAIQWRDALDRLENSPHKEIMDVLQISVDGLQHEEKEMFLHIACFFKGERVDYVKRILDACGLHPHIGIQSLIEKSLITIRNQEIHMHEMLQELGKKIVRHQCPRQPGSWSRLWLYKDFYNVLETETGTDNVEGIVLDQKENVSKCKAEGLSKMKSLRLLILYHRNFSGRLTFLSNNLEYLLWHDYPFLILPSTFEPYYLVELNMPHSSIQRLWKGTKHLPCLRRVDMSNSKYLLETPSFEGIPNLERLDLTGCTNLLHVHPSIGVLTKLAFLSLRNCRSLISLDFGDGSNLCSLKVLHLSGCTKLKHTPYFTGISNLEYLDMDQCRSLYVVHESIGALVKLRLLSLRDCTNLVTIPSSVNTMTSLITLDLCGCCKLMNMPLRWISNPSFQLRSLICLNLSFCNLPNVSDAIGELRCLARLNLQGNNFVSLPPTTQRLSSLAYLNLAHCHKLECLPWLPPESALSVGKYFKTESGSRDHRSGLYIFDCPKVVYNDLLYFNFELQWPLRLVTEPRHFRCGFDIVVPWNNETTPVWFNHQFDGGSTIRIMNSSVDDSCIGFAFCVVFKKVKSGPSIASSSSHDPCSPQLPHPFYLSFESDHTEERFDMALNLEPESIDGRKYLWIIYISRQHCHFLKTGAHITFKAYPSLMIKKWGLNMLIAKNGEALERRSPRLCSKRLAIDNVEKSNSNFGPKIQLPYNWFISEEDEVENDQAEGKENNLSNLVKLPTLDPPSGVWSLSGPRA* 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3112 1166 ProSiteProfiles TIR domain profile. 33 199 IPR000157 GO:0007165
Lja3g3112 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 465 IPR027417 -
Lja3g3112 1166 Gene3D Ribonuclease Inhibitor 736 810 IPR032675 -
Lja3g3112 1166 Gene3D Ribonuclease Inhibitor 559 735 IPR032675 -
Lja3g3112 1166 Gene3D - 203 366 IPR027417 -
Lja3g3112 1166 Gene3D - 371 455 IPR042197 -
Lja3g3112 1166 SUPERFAMILY L domain-like 526 885 - -
Lja3g3112 1166 SMART till_3 34 174 IPR000157 GO:0007165
Lja3g3112 1166 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 27 732 - -
Lja3g3112 1166 Pfam NB-ARC domain 225 449 IPR002182 GO:0043531
Lja3g3112 1166 PRINTS Disease resistance protein signature 713 729 - -
Lja3g3112 1166 PRINTS Disease resistance protein signature 313 327 - -
Lja3g3112 1166 PRINTS Disease resistance protein signature 406 420 - -
Lja3g3112 1166 PRINTS Disease resistance protein signature 236 251 - -
Lja3g3112 1166 MobiDBLite consensus disorder prediction 1130 1166 - -
Lja3g3112 1166 Gene3D - 29 202 IPR035897 -
Lja3g3112 1166 Pfam TIR domain 34 205 IPR000157 GO:0007165
Lja3g3112 1166 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 739 801 - -
Lja3g3112 1166 SUPERFAMILY Toll/Interleukin receptor TIR domain 25 177 IPR035897 -
Lja3g3112 1166 Gene3D Ribonuclease Inhibitor 811 888 IPR032675 -
Lja3g3112 1166 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 732 IPR044974 GO:0006952
Lja3g3112 1166 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 739 801 IPR044974 GO:0006952
Lja3g3112 1166 Pfam Leucine Rich Repeat 622 641 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3112 Lja-Chr3 59367380 59372795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3112 211 800 WRKY Transcription Factor Family AT5G45050 31.912 1.12e-84 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3112 - - var:108332841 1411.36