Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3109 ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTACGGCTTGATCGACGACGACATTCCCGGCTCCGATGGCTCCTTCACGCTCTCCGCTTCCGCCTTCAACTGGCCTCCACCACCACAGCCCTCCAATGTCGGGGTTGAAATTGATGGCTCCCTGGGGGATTTTGATGGGCTCAAAGATCCTGGTGTGAAGAAGAGGGGTAGAACTGATTCATGTGCACCTTCTAGCTCTAAAGCTTGCCGGGAGAAGTTGCGGAGGGATAAACTGAATGACAAGTTTGTCGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCTATTCTTATAGATGCAGTTCGAGTGGTGACGCAGTTGCGAGGTGAAGCCCAGAACTTGAAAGACTCAAATACAAGTCTTCAAGAAAAGATAAAAGAGTTAAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAACAGAGGCTTAAAGCAGAGAAAGAGAAGTTGGAGCAGCAGGTGAAATTAATGAATGTTCAACAACCTGGTTTCTTGCCAGCCCCTCCTACAATTCCTGCTGCATTTTCTGCACTTGGTCAAGCCCCTGGCAGCAAGTTTGTGCCTTATGGTTACCATCCAGGAGTTGCCATGTGGCAATTTTTGCCGTCTGCTGCCGTGGATACCTCACAGGACCATCAACTCCGACCACCAGCTGCCTAA 711 0.4951 MVSPENTNWLFDYGLIDDDIPGSDGSFTLSASAFNWPPPPQPSNVGVEIDGSLGDFDGLKDPGVKKRGRTDSCAPSSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRVVTQLRGEAQNLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKLMNVQQPGFLPAPPTIPAAFSALGQAPGSKFVPYGYHPGVAMWQFLPSAAVDTSQDHQLRPPAA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3109 236 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 236 - -
Lja3g3109 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 149 IPR036638 GO:0046983
Lja3g3109 236 MobiDBLite consensus disorder prediction 59 82 - -
Lja3g3109 236 Gene3D - 77 151 IPR036638 GO:0046983
Lja3g3109 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983
Lja3g3109 236 CDD bZIP 140 172 - -
Lja3g3109 236 CDD bHLH_AtILR3_like 79 154 - -
Lja3g3109 236 Pfam Helix-loop-helix DNA-binding domain 78 125 IPR011598 GO:0046983
Lja3g3109 236 SMART finulus 80 131 IPR011598 GO:0046983
Lja3g3109 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lja3g3109 236 Coils Coil 122 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3109 Lja-Chr3 59270930 59273512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3109 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 67.917 2.62e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g3109 HLH 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3109 - - ccaj:109815088 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3109 3 59270930 59273512 Lja3g3109 3 59270930 59273512 PCT