Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3085 ATGTGTATATTTTGTTTACTAATTTCTCAGGTGGATACCTCACAAACCACCTATGGCAGTACTGGATCTCAAACATTGTCTTCTGAACAATCTGCAAGCGCTAATGCTATCTCATCTGACCATTCATGTTCCACAAACCTCTCAGTGAGTTGTGGAGCAAACAACTCGAAACGAGCAACTGACCTTCTTTTTGGGATCTCAATGTATTCTGAGCAAACTAAGGCTGAGATCATTAATTCCGCGCGTTCAGCTGTGGATGAGTTGATAAAGATAGGCCTCGCAGGGAAACCTTTGTGGCAGCCCAAAAAAGAGAATAGTAGGTACGAGACACTAAACGATATCGAATACCTGAGACAATTTGGTCAAGCTGACACAACACTGAGAGAGATCATGAAGTTGGTTGAGGTTGGAGAGCCTCAAAGTTTGCCAAGCTTTGATGCATACCATACTCAACATACAACATCAAAGGAAGCTCCAAGACCAGCTTTGAAAGTTGAATCTTCAAGAGATATGGCATGTGTTAACATGACTCCAAAAAACATTACTGATCTGCTTATGGATGTGAATCAATGGTCTGGAGTATTTCACAATATTGTCTCAAAGGCAGCGATCCTAGAAACCTTTACAGATGTAGTTGAAGGAAGCTATGATGCAACATTGCATGTGATGAGTGCAGAACTTCATTTGCCTACCCCTCTGGTACGCACACGGGAGTGTTATTTTGCAATGTACTCCAAGCAGGTGTCTGATGAGAGGTGGGTGGTGGTTGATATGTCGTTGGAGAAGTTTTTTCCTTCTCCATCAAACAATTTTCACAAAAGACCATCAGGCTGTTTGATTGCAGGAATTCCTAATGGGACCTCCAAGGTTATATGGGTGGAGCATGTGGAAGCAGACCATAGCCAATTGCATGATCTTTTCAAGCCTCTAGTCGCCTCTGGTTTGGCTTTTGGTGCAACGCGGTGGCTTGCTTCCCTAGTTCGCCACAGTAAATGGTCTGAAACCCTTAATGCACCAGTACTGTTTGCAGAGAAAGGGGTTCGCATACCTCAGTCTGGGAGGACAACTTTGTTAAAACTAACGGATAGAATGATGAGAACCTTTTGTCGCAATGTGAGTGCTACTGCAAGCAATCAATGGATGCAAATGACTTCATTTCCTGGTTGTGAGGATGTGAGAGTGATGATCAAGAATAATCCGGAGGGTATCCCTATGTTTGGGAGAACATCGCTGGTTTTCACTACTTCTCTTCGTCTTGAAGTCTCCCCAAACCGATTATTTACCTTCCTTCGTCATGAGGATTCTAGAAAGAAGTGGGATATGCTTTCTCAAAATCTTACTACCGAACAGTTTGCCTACATTATCAAGGGAGAAAATGCAGGGAACCGAGCTTCCTTGCTGCGCGCAATTACTCCCAGGGGCAGGACTGACATCTTTTATGTGCAAGAGAGTTACACAGACTCATCATGCTCGTATGTGATTTACGCGCCGCTAGACGAGTGGGCTCTGCAAGGTATTGCAAATGGAATCAACCCTGACATTGTGATTGTTCTTCCATCAGGGTTTTCTATTCTTCCTGCAGGACAAGATCATGAAGGAAAAGACAATGCAAGTCTTCTAACAATTGCATTCAATCTCATTGATAATGAGGCTACTGAGTCATGTATTCCTCCTCAATCGGTTGAAACCTATTATGGCATTATTACAGACACTGTTACCTCTATCAAGGACGCAGTGCAGTATAATAATCGACTCAACAATTGGATTGGAGATTGA 1776 0.4307 MCIFCLLISQVDTSQTTYGSTGSQTLSSEQSASANAISSDHSCSTNLSVSCGANNSKRATDLLFGISMYSEQTKAEIINSARSAVDELIKIGLAGKPLWQPKKENSRYETLNDIEYLRQFGQADTTLREIMKLVEVGEPQSLPSFDAYHTQHTTSKEAPRPALKVESSRDMACVNMTPKNITDLLMDVNQWSGVFHNIVSKAAILETFTDVVEGSYDATLHVMSAELHLPTPLVRTRECYFAMYSKQVSDERWVVVDMSLEKFFPSPSNNFHKRPSGCLIAGIPNGTSKVIWVEHVEADHSQLHDLFKPLVASGLAFGATRWLASLVRHSKWSETLNAPVLFAEKGVRIPQSGRTTLLKLTDRMMRTFCRNVSATASNQWMQMTSFPGCEDVRVMIKNNPEGIPMFGRTSLVFTTSLRLEVSPNRLFTFLRHEDSRKKWDMLSQNLTTEQFAYIIKGENAGNRASLLRAITPRGRTDIFYVQESYTDSSCSYVIYAPLDEWALQGIANGINPDIVIVLPSGFSILPAGQDHEGKDNASLLTIAFNLIDNEATESCIPPQSVETYYGIITDTVTSIKDAVQYNNRLNNWIGD* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3085 591 SUPERFAMILY Bet v1-like 354 530 - -
Lja3g3085 591 CDD START_ArGLABRA2_like 74 330 - -
Lja3g3085 591 Gene3D - 146 326 IPR023393 -
Lja3g3085 591 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN ROC2 57 583 - -
Lja3g3085 591 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 57 583 IPR042160 -
Lja3g3085 591 SUPERFAMILY Bet v1-like 165 331 - -
Lja3g3085 591 Pfam START domain 150 330 IPR002913 GO:0008289
Lja3g3085 591 ProSiteProfiles START domain profile. 70 335 IPR002913 GO:0008289
Lja3g3085 591 SMART START_1 122 332 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3085 Lja-Chr3 58401877 58406254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3085 61 579 Homeobox Transcription Factor Family AT4G04890 39.411 5.13e-112 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3085 K09338 - jre:108992281 479.944