Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3076 ATGTACCACCGTAGATTCAAAATCAACACCCGGCAATTATACGCCTCTGACAGCCCAAATGACCTTGAGCCCGAGCCCATCTCTGAGCCCGGGCCCGCTTCACCTTCTTCCGGTGAAGACATAAAAACTGAAGCACCATCTCCCAAGAAAAGGAGGGAGATGAAGAAGAGGGTGGTGACTTTACCAATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGACATATCCACCGTCCGATTCATGGGCCTGGAGAAAGTACGGTCAGAAGCCCATCAAAGGTTCCCCTTATCCCAGGGGATACTACCGATGCAGCAGTTCAAAGGGATGCCCCGCAAGGAAGCAAGTTGAAAGAAGCCGCGTGGACCCCACAAAGCTCATGGTCACCTACTCCTACGAACACAACCACTCCCTCCCCGTTCCCAAATCACATTCCTCCGCCGCCTCCGCCACCGCAACCACCTCCAGCGACGGCGCTGCTGACACTCCCGCCACGCCTACCGAGTCCACCGCCATGTTGCCGCCGGAGGAGGATCTGACGGTTTTCGCCACGCATCCCGATCTGGAATTCACCGGCGACTCGGCGGTTCTGCTCGGCCACCACCACCACCACGCAGATTTCGGGTGGTTCGACGACGTGGCCTCCACCGGCGTTCTTGAAAGTCCGATCTGCGACGAGGTGGAGGATGTGATGCTAACGATGAGGGAGGAAGACGAGTCGCTGTTTGCCGATCTCGGCGAGTTGCCGGAGTGTTCGGCGGTTTTCCGGCGAAGGAATATTCTGAGCACCAGCACGATACAGTGTGATGGCATCACAGGATAA 822 0.5681 MYHRRFKINTRQLYASDSPNDLEPEPISEPGPASPSSGEDIKTEAPSPKKRREMKKRVVTLPIGDVDGSKSKGETYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLMVTYSYEHNHSLPVPKSHSSAASATATTSSDGAADTPATPTESTAMLPPEEDLTVFATHPDLEFTGDSAVLLGHHHHHADFGWFDDVASTGVLESPICDEVEDVMLTMREEDESLFADLGELPECSAVFRRRNILSTSTIQCDGITG* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3076 273 MobiDBLite consensus disorder prediction 1 78 - -
Lja3g3076 273 Pfam WRKY DNA -binding domain 80 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g3076 273 SMART WRKY_cls 78 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g3076 273 Gene3D WRKY domain 66 140 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g3076 273 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 27 263 IPR044810 GO:0003700
Lja3g3076 273 ProSiteProfiles WRKY domain profile. 79 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g3076 273 SUPERFAMILY WRKY DNA-binding domain 74 139 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g3076 273 MobiDBLite consensus disorder prediction 137 174 - -
Lja3g3076 273 PANTHER OS01G0750100 PROTEIN 27 263 - -
Lja3g3076 273 MobiDBLite consensus disorder prediction 137 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3076 Lja-Chr3 58155090 58158183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3076 3 260 WRKY Transcription Factor Family AT3G58710 48.864 5.73e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja3g3076 WRKY 2.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3076 - - gmx:100170680 401.749