Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3072 ATGGCCTCCATTCCATTGGGGCCGCACCACCTTCAACCACCGCAACCGGCACCTCTACCGCTGCCACTTCCGCCGCAGTTGCTGCAGCCGCAAGCCGAAACTGACCCTCTCAAAGCTTCAGCTGCTGGTGCCGCCGCCTCCGCCATGGACACCGATAAGGAAATGTCAGCTTCTGTCGGTGAGGGTAATGACGCAGTTACCGGTCACATAATCTCAACCACAATCGGAGGCAAAAATGGTGAACCTAAACGGACCATCAGTTACATGGCTGAACGTGTTGTTGGCACTGGATCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACTGGGGAAGCAGTGGCCATAAAGAAGGTTTTGCAGGACAAGAGGTACAAAAATCGTGAATTGCAGTTAATGCGGGTGATGGATCATCCAAATGTGATTTCCCTGAAGCACTGTTTCTTCTCTACGACAAGCAGAGATGAACTTTTTCTGAACTTGGTAATGGAATATGTCCCTGAGACATTGTACCGAGTTCTAAAGCACTACAATAATATCAATCAGAGAATGCCCCTAATCTATGTGAAATTGTATACATATCAAATCTTTAGAGGACTAGCATATATCCATACTGTACCAGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTGATCCTCTCACTCACCAAGTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTTCTGGTCAAAGGTGAATCAAACATTTCGTACATATGTTCACGGTACTATCGAGCGCCGGAACTAATATTTGGTGCGACAGAATACACAACTTCTATTGATATTTGGTCTGCTGGTTGTGTCCTAGCAGAACTACTTCTAGGCCAGCCATTGTTCCCCGGTGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAACCCTAATTATACAGATTTTAGATTCCCCCAGATTAAAGCTCATCCTTGGCATAAGGTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTCGCATCAAGGCTGCTCCAATATTCACCAAGTCTTCGTTGCAGTGCACTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGGTTACCTAATGGCCGTCCATTGCCGCCACTTTTCAACTTCAGACAGGAATTAGGTGGAGCATCCCCTGAACTGATCATTAAACTCATACCTGAGCATGTGAGGCGGCAAACTGGTCTTAGCTTCCCATATCCGGCTAGCACATAA 1287 0.4608 MASIPLGPHHLQPPQPAPLPLPLPPQLLQPQAETDPLKASAAGAAASAMDTDKEMSASVGEGNDAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDKRYKNRELQLMRVMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETLYRVLKHYNNINQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRPLPPLFNFRQELGGASPELIIKLIPEHVRRQTGLSFPYPAST* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3072 428 Pfam Protein kinase domain 88 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3072 428 ProSiteProfiles Protein kinase domain profile. 88 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3072 428 MobiDBLite consensus disorder prediction 9 29 - -
Lja3g3072 428 SUPERFAMILY Protein kinase-like (PK-like) 87 396 IPR011009 -
Lja3g3072 428 PANTHER OS02G0236200 PROTEIN 30 420 - -
Lja3g3072 428 CDD STKc_GSK3 83 375 IPR039192 -
Lja3g3072 428 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 30 420 - -
Lja3g3072 428 Gene3D Transferase(Phosphotransferase) domain 1 168 415 - -
Lja3g3072 428 ProSitePatterns Protein kinases ATP-binding region signature. 94 118 IPR017441 GO:0005524
Lja3g3072 428 MobiDBLite consensus disorder prediction 1 61 - -
Lja3g3072 428 Gene3D Phosphorylase Kinase; domain 1 73 167 - -
Lja3g3072 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Lja3g3072 428 SMART serkin_6 88 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3072 Lja-Chr3 57874457 57880219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3072 92 410 MAP Kinase Gene Family AT3G59790 35.928 1.99e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lja3g3072 Pkinase 6.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3072 K14502 - qsu:111995841 750.74