Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3070 ATGGAAGAGGATGATGCTGGGTACAGAAGGAAGGCCAACATTGCAGTCGTTTCCATCGTGGTGCTTGCTTCCCTCGCCGTCTTTGCTTCACTGGTTGCCTTTGCTTACTACTGCTACATCCGCATCAAAGTCTCCAAACGCCGCAAAAGCCAGAAAGTTGAAGACGCTAACCTTAACGAGAAAAGTGAATTTGCAAACCTGCAAGTTGTTGTTGAGAAAGGACCTCGGGTGTTTACTTTCAAGCAGCTGCATTCTGCTACAGGGGGCTTCAGCAAGTCAAATGTGATTGGTCATGGCGGCTTTGGACTTGTTTACCGCGGAGTGCTCAATGATGGCAGGAAAGTTGCAATTAAGCTCATGGATCAGGCAGGAAAGCAAGGAGAAGAAGAATTTAAAGTAGAGGTGGAATTACTAAGTCGGTTACATTCTCCATATTTGTTGGCATTGCTTGGGTATTGCTCTGATAGTAATCATAAACTGCTGGTGTACGAGTTTATGGCGAATGGTGGCTTGCAGGAACATCTTTATCCTGTCAGCAATTCTAATGTTACACCCATGAAGTTGGATTGGGAAATTCGATTAAGAGTAGCACTCGAAGCTGCCAAAGGTTTGGAATATCTTCATGAACATGTTAGTCCCCCAGTGATTCACAGAGATTTTAAGAGCAGCAACATCCTCTTGGATAAGAGATTTAATGCTAAAGTTTCTGATTTTGGATTGGCAAAGCTTGGACCTGATAGAGCTGGTGGACATGTTTCAACCCGCGTTTTAGGCACCCAGGGATATGTAGCCCCTGAATATGCACTAACTGGGCATTTAACAACAAAATCAGATGTGTACAGCTATGGTGTTGTACTCTTGGAGCTGCTCACAGGTCGAGTGCCAGTTGATATGAAAAGACCCCCAGGGGAAGGTGTTCTTGTTTCTTGGGCTTTGCCCCTTTTGACTGATAGAGAAAAGGTTGTGAAGATTATGGATCCTGCAATGGAGGGACAGTACTCTATGAAAGAGGTTATCCAGGTAGCGGCAATTGCTGCGATGTGTGTGCAACCAGAGGCAGATTATCGACCTCTAATGGCAGACGTTGTGCAGTCGTTGGTGCCGTTGGTGAAGACTAACAGGACCACCTCAAGGGTTGGAAACTGCTCCAGTTTCCATTCCCCTATGTTGTCCCCAGGCCAACATCTAGTTACCACAGATATGTAA 1206 0.4561 MEEDDAGYRRKANIAVVSIVVLASLAVFASLVAFAYYCYIRIKVSKRRKSQKVEDANLNEKSEFANLQVVVEKGPRVFTFKQLHSATGGFSKSNVIGHGGFGLVYRGVLNDGRKVAIKLMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDSNHKLLVYEFMANGGLQEHLYPVSNSNVTPMKLDWEIRLRVALEAAKGLEYLHEHVSPPVIHRDFKSSNILLDKRFNAKVSDFGLAKLGPDRAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVSWALPLLTDREKVVKIMDPAMEGQYSMKEVIQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTNRTTSRVGNCSSFHSPMLSPGQHLVTTDM* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3070 401 Pfam Protein tyrosine and serine/threonine kinase 93 366 IPR001245 GO:0004672|GO:0006468
Lja3g3070 401 PANTHER OS07G0227300 PROTEIN 3 392 - -
Lja3g3070 401 Gene3D Transferase(Phosphotransferase) domain 1 166 384 - -
Lja3g3070 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Lja3g3070 401 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Lja3g3070 401 Gene3D Phosphorylase Kinase; domain 1 48 165 - -
Lja3g3070 401 CDD STKc_IRAK 96 369 - -
Lja3g3070 401 ProSiteProfiles Protein kinase domain profile. 90 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3070 401 PANTHER OS01G0750732 PROTEIN 3 392 - -
Lja3g3070 401 SUPERFAMILY Protein kinase-like (PK-like) 71 366 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3070 Lja-Chr3 57818227 57821692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3070 1 392 Receptor kinase-like Gene Family AT3G58690 76.786 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lja3g3070 Pkinase 6.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3070 - - gmx:100804893 683.33