Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3069 ATGTCAGGAGCAGGAGGACCCGTTTCACAGGACTGGGAACCCGTTGTCCTCCGCAAGAAGGCTCCCACCGCCGCTGCCAGGAAAGATGACAAGGCTGTCAACGCCGCTCGCCGCGCCGGAGCTGACATCGAAACCGTCAGGAAACATAATGCTGGGACAAACAAAGCTGCTTCAAGTGGCACTTCACTGAACACTAAGAGGCTGGATGAGGATACAGAGAATTTAACTCATGATCGTGTGCCAACTGAACTCAAGAAAGCTATAATGCAAGCCCGGATGGATAAGAAATTAACTCAGGCTCAACTTGCTCAGATAATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAAGCGATTCCAAACCAGCAGATTATTGGCAAATTGGAGAGAGCCCTTGGTGCCAAACTGCGTGGCAAGAAATGA 432 0.5023 MSGAGGPVSQDWEPVVLRKKAPTAAARKDDKAVNAARRAGADIETVRKHNAGTNKAASSGTSLNTKRLDEDTENLTHDRVPTELKKAIMQARMDKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3069 143 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 6 143 - -
Lja3g3069 143 SUPERFAMILY lambda repressor-like DNA-binding domains 81 139 IPR010982 GO:0003677
Lja3g3069 143 SMART mbf_short4 87 142 IPR001387 -
Lja3g3069 143 Gene3D - 72 143 IPR010982 GO:0003677
Lja3g3069 143 Pfam Helix-turn-helix 88 138 IPR001387 -
Lja3g3069 143 MobiDBLite consensus disorder prediction 51 65 - -
Lja3g3069 143 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1A 6 143 - -
Lja3g3069 143 MobiDBLite consensus disorder prediction 1 33 - -
Lja3g3069 143 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Lja3g3069 143 MobiDBLite consensus disorder prediction 47 75 - -
Lja3g3069 143 CDD HTH_XRE 86 136 IPR001387 -
Lja3g3069 143 Pfam Multiprotein bridging factor 1 10 80 IPR013729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3069 Lja-Chr3 57784505 57787409 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Lja3g3069 MBF1 2.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3069 K03627 - gmx:100500420 251.521