Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3067 ATGGCTGAGACAATTTGCATATCTGATGAAGACAAGAGTGAAGGGAGCGTCGTTGTTCGAGCCAAACCCCCTTCTCCAGGTCAAAGAAAACGTTCATTCTTGGACTTGAATGAAGAAGCTTTGGATGATGGAGATGATAACATGAGTGATGAGACCAGCAACAATGAGAATGAGATATCATCTCAAGAAGGTAACTTGAGTACTAGCAATAACTCCAGTGAAGAGCGTGGAACTACGGTGAGGCAATATGTACGGTCCAAAATGCCAAGGCTGCGTTGGACTCCTGATCTCCATTTATCTTTTGTCCGTGCTGTTGAGAGGCTTGGTGGCCAAGAAAGAGCCACACCCAAGTTGGTTCTCCAATTGATGAATGTGAGAGGACTTAGCATTGCACATGTCAAGAGTCATTTGCAGATGTATCGAAGTAAGAAGCTTGATGAGTCTGGCCAAGTTTTATCCCAAAATAGGGTCATGCAAGGAAGGAATCAAATGTTTGATATGTACGGAAGACTAATTAATGCCCAACAAGGATACTTTGGGGTTGACAACAATAAGAACTTTCTGCTGCAGCCATCATCTCTATTAGTGAAACAACCCTATGAAGAAATCAAATCTCATGGCTCTTCAAGATTCAACACCACTGGGCTTTTCAATAGTCACATGATCATGACATCAAGTTCATCAGTGTGGGAAAAAGAGCCAAGTTCACATATATTTGATGTAAGGGATGCAATAACAAAAAATGTGTCTCTTAGTTCTAGCCAAGTACAAGATAAGAAATGGCTTCTTCAGGGAATAGCTACATCACAAAGAAGTGATAGACACGAATCTATTATTAGCATATCTCAAGATGACAAGTATAGTGCACAACCTTCTCCATGGAGCAACTTCTCTAGTTCTATCAATAATCAATATCAACGTAGTTCCTGCAGTATCTTCAATGTTCATGCCCAGTTTGATGCTGAGGTTCATGATTTAAAAGATCGAATGCCAGGTTTCACAAAACAAGTTCAAGTATCGAAGCAAAGTCATGTTAAGTCCCAGTTAGAGAGGTTGAATGAGAAGAAAGGATCACCAAGTTTTCTAGAGCTAAAGCTAAGTCAAGAAACAGGAAATGTTAGAGACCAAGTGAATCCTCTCCCAGAAAATGAGCAGGAAATCAATACAATACTTTCACTATCATTGTTCTCTTCGTCATCCTCAAATTCAAGGCAACAAGAACAATGTAGTGAAAAGCATAAAGACAATACTCAAATTGAGAGTATGTGTTTACAAAATTGTGTGCCAATGAGTCGTTTGGGCTGA 1305 0.3985 MAETICISDEDKSEGSVVVRAKPPSPGQRKRSFLDLNEEALDDGDDNMSDETSNNENEISSQEGNLSTSNNSSEERGTTVRQYVRSKMPRLRWTPDLHLSFVRAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQNRVMQGRNQMFDMYGRLINAQQGYFGVDNNKNFLLQPSSLLVKQPYEEIKSHGSSRFNTTGLFNSHMIMTSSSSVWEKEPSSHIFDVRDAITKNVSLSSSQVQDKKWLLQGIATSQRSDRHESIISISQDDKYSAQPSPWSNFSSSINNQYQRSSCSIFNVHAQFDAEVHDLKDRMPGFTKQVQVSKQSHVKSQLERLNEKKGSPSFLELKLSQETGNVRDQVNPLPENEQEINTILSLSLFSSSSSNSRQQEQCSEKHKDNTQIESMCLQNCVPMSRLG* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3067 434 Gene3D - 88 145 - -
Lja3g3067 434 SUPERFAMILY Homeodomain-like 87 143 IPR009057 -
Lja3g3067 434 MobiDBLite consensus disorder prediction 1 79 - -
Lja3g3067 434 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 33 416 - -
Lja3g3067 434 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 144 IPR006447 GO:0003677
Lja3g3067 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 145 IPR017930 -
Lja3g3067 434 MobiDBLite consensus disorder prediction 53 79 - -
Lja3g3067 434 MobiDBLite consensus disorder prediction 1 17 - -
Lja3g3067 434 Pfam Myb-like DNA-binding domain 91 141 IPR001005 -
Lja3g3067 434 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 33 416 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3067 Lja-Chr3 57720540 57725550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3067 80 148 G2-like Transcription Factor Family AT2G42660 84.058 1.47e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja3g3067 Myb_DNA-binding 7.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3067 - - lang:109337615 416.001