Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3060 ATGGACTCCCCCGCCGGAGCGCCGCCGCACCCCGTCGCATCTCGGCCGTCGCCGTTTCCGGCTCGCGAAGACTGCTGGTCGGAGGAAGCCACGTTCACCCTTGTCGACGCCTGGGGCGAGCGCTACCTCGACCTGAACCGCGGCAACCTCCGTCAGAAGCACTGGCAGGAGGTCGCCGACGCCGTCAACGACCGCCACGGCCACGACCGGAAGGCGCGCCGCACCGACGTCCAGTGCAAAAACCGAATCGACACGCTCAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCCGATTCCGGCGATTACGCCAGCACATGGCCTTTCTTCCGCCAACTCGATTCCCTCATCGGAGACACTTTCCCGGCGACGAGACCCTCCCCGCCGTCTTCCTCTGGCGGCCGCCGTGACAGTCCGCCCATGAGCTCTCCTGCCTGGACGCTCGTGCCGGTGGGCCGTCGATCCGCCACTCTGAAACGTCCACCGGCGACGACGACTTCGCCGGCGAATTTGGACAACTCGTACCTCCGGCAGAAACTGTCGGCGTTCGCAGCGGCGGCTGCTGCGGCGGCGGAGGCGGAGAAGAACAGTGAGAATTCGAATGGTTCAAAGGGGAAGAAGAGGGGAAGAAGGGATTGGGAATTTGGGTACAGAGATGTTGCAGAGGCCATAGAGAGGTTTGGGGAGATATATGAGAGGGTGGAGTTAGCAAAGCAAAGGCAAATGATGGAGTTGGAGATACAGAGGATGCAATTTGCTAAGGATTTGGAGTACCAGAGGATGCAGCTCTTCATGGAAACTCAAGTGCAGCTTCAAAAAATCAACACCTCCAAGCGATCTTCTACACCTGATAGTTTCTCGTAG 864 0.5938 MDSPAGAPPHPVASRPSPFPAREDCWSEEATFTLVDAWGERYLDLNRGNLRQKHWQEVADAVNDRHGHDRKARRTDVQCKNRIDTLKKKYKIEKARVSDSGDYASTWPFFRQLDSLIGDTFPATRPSPPSSSGGRRDSPPMSSPAWTLVPVGRRSATLKRPPATTTSPANLDNSYLRQKLSAFAAAAAAAAEAEKNSENSNGSKGKKRGRRDWEFGYRDVAEAIERFGEIYERVELAKQRQMMELEIQRMQFAKDLEYQRMQLFMETQVQLQKINTSKRSSTPDSFS* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3060 287 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g3060 287 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 10 284 - -
Lja3g3060 287 Gene3D - 26 92 - -
Lja3g3060 287 MobiDBLite consensus disorder prediction 118 171 - -
Lja3g3060 287 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 10 284 IPR044823 -
Lja3g3060 287 MobiDBLite consensus disorder prediction 124 138 - -
Lja3g3060 287 Pfam Myb/SANT-like DNA-binding domain 23 116 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3060 Lja-Chr3 57573653 57575852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3060 217 274 Trihelix Transcription Factor Family AT3G14180 48.276 5.35e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja3g3060 Myb_DNA-bind_4 4.9e-27 CL0123