Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3055 ATGGGTGTGGACTATTACAAAATCTTGCAGGTTGATAAGATTGCTACAGATGATGACTTGAAGAAGGCTTATAGAAAACTCGCCATGAAATGGCACCCTGATAAGAATCCAAGCAACAAAAAAGAAGCTGAAGCTAAGTTTAAGCAAATTTCAGAAGCCTACGAGGTGCTAAGTGATCCTGACAAGAGAGCTATCTATGATCAATATGGAGAAGAGGGTTTGAAGGGTCAGGTTCCCCCTCCTGATCCTGGTGGTGGTGGTGGTGGTTGTGGTGGCAGCACTACTTTCTATTCCACAGGAGATTTCCCAGGATCGTTTCGATTCAATCCAAGGAATGCTGATGACATTTTTGCAGAGTTTTTTGGGTTCTCAAGCCCCTTTGGTGGCATGGATGGGAGAGGTTGTGGTAGTGGCATGAGATCCAGGTTCTCTGGTGGTATGTTTGATGATAATATGTTTGGATCTTTTGGGGAAGGTGGAAGAGTAAATGTGAATCAAGGTGCAACGCGCAAAGCTCCTCCCATTGAGAATAAGCTTCCCTGTACACTTGAGGAGATATATAGAGGGACAACAAAAAAGATGAAGATCTCTAGAGAGATTGCAGATGCCAGTGGCAAAACCATGCCCGTGGAGGAGATCTTGACCATTGATGTTAAGCCTGGTTGGAAGAAGGGGACAAAGATCACATTCCCAGAGAAGGGTAATGAACAGCCAAATATAGCACCTGCTGATCTTGTTTTTGTCATCGACGAAAAGCCGCAGAGTGTTTTCACCCGCGATGGAAATGATCTGATTGTCACCCAGAAGATATCACTTGTCGAGGCCTTAACTGGTTACACAGTGCAGCTCACTACCTTGGATGGTAGAAACTTAAGCATACCAATCAACAATATTATCCATCCCAACTATGAGGAGGTTGTCCCAAAAGAAGGAATGCCACTCTCTAAGGATCCATCAAAGAAAGGGAACTTGAGGATAAAATTCAACATCAAGTTCCCAACTCAGCTCAATGATGAACAAAAAGCAGGAATCAGGAAACTCTTGGCTGCCTCAGCCTGA 1059 0.4419 MGVDYYKILQVDKIATDDDLKKAYRKLAMKWHPDKNPSNKKEAEAKFKQISEAYEVLSDPDKRAIYDQYGEEGLKGQVPPPDPGGGGGGCGGSTTFYSTGDFPGSFRFNPRNADDIFAEFFGFSSPFGGMDGRGCGSGMRSRFSGGMFDDNMFGSFGEGGRVNVNQGATRKAPPIENKLPCTLEEIYRGTTKKMKISREIADASGKTMPVEEILTIDVKPGWKKGTKITFPEKGNEQPNIAPADLVFVIDEKPQSVFTRDGNDLIVTQKISLVEALTGYTVQLTTLDGRNLSIPINNIIHPNYEEVVPKEGMPLSKDPSKKGNLRIKFNIKFPTQLNDEQKAGIRKLLAASA* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3055 352 SMART dnaj_3 3 62 IPR001623 -
Lja3g3055 352 Gene3D - 174 252 - -
Lja3g3055 352 CDD DnaJ 4 59 IPR001623 -
Lja3g3055 352 Pfam DnaJ C terminal domain 175 333 IPR002939 -
Lja3g3055 352 CDD DnaJ_C 173 336 - -
Lja3g3055 352 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lja3g3055 352 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lja3g3055 352 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lja3g3055 352 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lja3g3055 352 SUPERFAMILY Chaperone J-domain 3 97 IPR036869 -
Lja3g3055 352 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 349 - -
Lja3g3055 352 Gene3D DnaJ domain 3 132 IPR036869 -
Lja3g3055 352 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lja3g3055 352 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lja3g3055 352 Gene3D - 255 334 - -
Lja3g3055 352 SUPERFAMILY HSP40/DnaJ peptide-binding domain 256 342 IPR008971 GO:0006457|GO:0051082
Lja3g3055 352 Pfam DnaJ domain 4 67 IPR001623 -
Lja3g3055 352 MobiDBLite consensus disorder prediction 72 92 - -
Lja3g3055 352 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 349 - -
Lja3g3055 352 SUPERFAMILY HSP40/DnaJ peptide-binding domain 174 253 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3055 Lja-Chr3 57268198 57271574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3055 5 69 C2H2 Transcription Factor Family AT1G74250 40.580 2.00e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3055 K09510 - gmx:100778672 582.408