Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3054 ATGGAGTGTGGTTCGGAGGAAGAGAACAAGAAGAATACACCAGAGGGGGAGAACAAGGTCAAGCGCAAAATGAAGTCTGCTTCACAGTTGGAGCTTCTTGAGAAAACTTATGCTGTGGAGGCCTACCCTGGGGAGGTGCTGCGGGCTGAGCTATCTGAGAAATTAGGTCTGTCAGATCGTCAATTGCAGATGTGGTTCTGTCACCGGAGACTGAAGGACAGGAAGGCTACGCCGGGGTCCAACAAGCTGCTAAATGACTCACCGCCGACTTCAGGTCCAGTTGGTGAGCGTGCTGAACAAGTAGCAAAGGCTGATGTCAAGCATGATGGTGGTGTGGCTTCTGAGTTGAGGCCATTTGGTCATCCTGACTCGTGGCGAGTTGTGCCACAGCCTGGGATTATGGCCTTTCCTATTATGGGGGCTGCTGGGTTGCCTGCAATGGAGAGCAGTAGTTACAATGAACCTCATCAGACCAGAGAGGAGCTGCGAGCTATTGCATTTATGGAAAGACAGTTGGGGGAGCCATTAAGAGAGGATGGACCGATTCTGGGAATGGAATTTGATTCTTTGCCACCGGGTGCATTTGGTGCACCAATAGGGGCTGTGACAATGGGTCAACACAGGCAATCTGGAAGGACCTTGGAGGCAAAAACTTATGAACAGCTGGACAAGGGTGTTTCATCAAGGACTCTCCATGAATATCAATTTATTCCAGAGCAGCCAACTGTTAAAATCGAGAAATATGAGAGAGTTTCCCCCTCCATCCACTTTAGTTCTCCTGATGGCATTCCACATCGTAGGACATTATTACCTAGTGGGCGATCTTGCCTTAATGGGAATGAATCTGCCCCTTATGGATATGGAGTTCAAGGTCAGATACCTCGTCTAAATCTTTTGTCCGAGCAAGGAAGGCAGAATCATCTTTTTCCTTCTGCTTCAGGAGGAAATGATGTTCTACAAAAGAACCCGTTTATTGATGCAACTTTCGAAACTCATAATGGGGCTCACCCAATAACTCTGATTGACAGCCCTCTAATGCCATCTAATAGGAGGGTTATCCATGAGGAGGAACTTTCAAGGTTTCAAAGGAAGCGAAAGATTGAAGAGGCTAGAATGCAACGGGAACTTGAAGCACAAGAGAAAAGAATTAGAAAAGAGCTTGAAAAACAGGATATTCTAAGGCAAAAGAGAGAGGAGCAAATAAAGAAAGAAATGGAGAGGCATAACCGTGAGAGGCAGAAGGAAGAGGAAAGGTTATTGCGTGAAAGACAGCGAGAGGAGGAGAGGCTTCAAAGAGAACAGAGGCGGGAACTTGAGCGGCGGGAGAAGTTCTTACAGAAGGAATCAATCAGAGCTGAGAAACTGAGACAGAAGGAAGAGCTTCGCAGGGTTAAAGAGGCAGCGAGGATCAAAGCTTCCAATGAAAGAGCTATTGCCCGTAGAATGGCCAAAGAATCAATGGAACTTATTGACGATGAACGTCTGGAACTTATGGAGTTAGCTGCATCAAAGAAGGGGCTTTCTTCAATACTGGCTCTTGACTATGAAACTATGCAAAATCTTGACTTATATCAAGATGAGCAGACTTCTTTCCCACCAAAGTCAGTACAGTTGAAACAAGCCTTTTCAATTCAACCTTGGTCAGACTCTGATGAGAATGTAGGAAATCTTCTGATGGTTTGGAAGTTCTTGATTACGTTTGCTGACGTTCTTGGAATATGGCCGTTTACCTTGGATGAACTTATACAAGCTTTTCATGACTATGACTCTAGGTTATTAGGTGAGATTCATATTGCTCTTCTGAGATGCATTATAAAAGATATTGAAGATGTTGCAAGAACACCCTTTACTGGGTTAGGGGCTAACCAAAACAATGTTGCCAATTCTGGTGGGGGACATCCCCACGTTGTTGAAGGGGCATATTTGTGGGGTTTTGATATAAGAAATTGGCAAAGTCACTTAAATCCATTAACATGGCCAGAGATTTTGCGACAATTTGCATTGTCAGCAGGATTTGGGCCTAAATTGAAGAAACGGAATATTGAGCAGGCTCTCTCTGGCAATAACGATGAGGGCAGTGATGGTAAGGATATAATTTCTAATCTACGCAGTGGAGCAGCTGCAAAAAATGCTGTTGCTATTATGCAAGAGAAGGGATTATCTAACCCAAGACGATCTAGGCATCGATTGACGCCTGGCACAGTTAAATACGCTGCATTTCATGTCCTTTCGCTCGAAGGAAGCAAAGGCCTCAATATATTAGAAGTTGCAGACAAGATTCAGAAATCTGGACTTCGTGACCTTACAACTAGCAAAACTCCAGAAGCTTCTATATCAGCTGCTTTGTCTAGGGATACAAAACTATTTGAAAGGACAGCTCCTTCAACATATTGTGTACGTCCTGCATATAGAAAGGACCCAGCTGATTCTGTAGCAATTTATTCAGCTGCTAGGGAAAGAATCAGGATATTCAAAAGTGGGTTTATGGATGCAGAAGACGTTGATGATGGTGAAAAGGATGAAGATTCTGAAAGTGATGTGGCAGAAGATCCCGAGATTGATGATTTAGAAACTGAAACAGATAAGAAAAAAGAGGTTTCCAATTCTTTGGGATTTAGTGAAAACACTGTAATCGAAAGTAGAAAGGACAATGGTGAGGTTTTACAAACTACTGATGCTTGGCCTGATAAAGTGGATGAGGGTTTAGCTCCCGTTGTAGCTGAAGGCCTCAACAAACATAAAATTGTGAGCACCTCTAGTAAAATTGCTGTTTGCAGCAATGCTGTGACTATTTCTGATATAGACGGTGAGGATGTTGATGATAGCATTCCAGGTGAACCATGGGTACAGGGGCTTATGGAGGGAGAGTATTCAGATCTTAGCGTGGAGGAGCGTCTTCAGGCTTTTGTTGCTTTGATTGGTGTGGCAACTGAAGGAAATTCAATCCGTGTTGCACTTGAGGAACGTCTGGAAGCAGCAAATGCTTTGAAGAAGCAGATGTGGGCAGAAGCACAGCTTGATAAACGCCGTATCAAAGAGGATTATTTTGTTAAGATGCAGCCTATCTCTTATCTTTGCAATAAGAATGAACCAGCTGTTGCATTTCTATCAGAAGGGGGTAAACAGTGCGCATTGCCTACTGCTGACGTAAAACATGACAAGGATTTACTCACTCCTTGTGACCAGCTTGAACAGACAAATGCACTACAGGAAAATCAAAACAATCTTCACAGTTCCCCATTAGAAGTTAACATGCACATGCAAGATTGCTCTACGGGCCCAGATAATTATTCTTTCCAACAATCAGGATATGCTGCTGAAAAATCAAGGTCAATTTTAAAATCATACATTGGCCACTTGGCTGAACAGACTTATATGTATAGGGCATTGCCTCTTGGTTTGGATCGAAGGCGTAATCGATACTGGCAGTTCATTACATCTGCTTCTCGTAATGATCCTGGCTGTGGCAGGATTTTTGTGGAGTTACGTGATGGGTGTTGGAAGCTGATTGATTCAGAAGAGGGTTTTGATGCTTTATTGGCATCTCTGGATGTCCGTGGAATCAGGGAGTCCTACTTGCATATGATGTTGGAAAGAGTTGAGATGTCATTCAAGGAATCTGTTAGAAGGAATGTCTTAAATAGTAACATGAGAATGCAAAATGGGGATACAGTCAGGAGACTCAAGACAGAAGCTGTTGAAATGGCTGAGCAAGATTGCAGTGCTGATATTCATTGTCCTACTACTGTAGGCATTGATAATTTGGATGCATCAGAGACCTCAACATCTTTTGTGGTCCAACTTGGAAAAAGTGAAGCTGATGACAAAGATGCTTGTACTAGGTATCAGGACTTTGAGAAATGGATGCGAAAGGAATGCCTAAATTCCCCATTATTATGTGCATTGAAGTTTGGGAAGAAGAGGTGTAACCAACTGCTGGCCATATGTGATGTGTGCCATCATGTCTGTTTCTTTGGAGAAGTTCGTTGTCCTTCATGTCATAAAACCTTCAGTACTTGTAAGAACAACTCTAGTTCTTCTGAACATATTGCTCATTCTGAAGGCAAGGTGAAGATTGGCACTGATTATTTTTCACCCTCGTCTCCTTTGAGGATGAGATTGCTCAAAATCCTCTTGTCCGTTGTTGAGGTATCCCTTCCTCAGGAAGCTCTGCTACCTCTTTGGACAGAGAAGTACAGAAAACCTTGGAGTATAAAGCTGGAAGCTTCCTCATCAACTGAAGACCTTCTTCAGATATTGACTGCATTGGAAGGTGCCATAAAGAGGGAGTATTTGGCTTCAAACTATGAAACTGCCCATGAGCTGCTGGGTTCTCTCAGTACTTCTGAATGCCCCATTAATGATTTCATAGGTGGTGAAAGGATACCTGTACTTCCTTGGGTCCCGTGCACAACATCTGCTGTGGCTCTAAGGCTCATGGAACTTGATGCTTGCATCTTTTACACCTCACGGCAAAAGCTGGAGTCTGAGAAGGATAAGAAAATTGGAATTGTTGTGAAGCTTCCATCAAAATATGCTGCTGCAAAAAATTCCTACAATGCTAGTGCCACTGAAACTTCACATCAGGCTGAGCATGAGGACTGTGTTGATCTTGGTGCTGGCCTTGCGAACTACAGCAGAGGACAAAGGGCTCGACAAGGCCGAGTCCATTCTTGCGGTGGAAAATCACAAGGAAAAGTTGTTAGTTCAAGATCCAAATCTAGAAAGAGAAGTACCAACTCTAAAAACAGAAAAATGGGCAAATTACTTGGATGGAAAGGGAGACCAAGTGACCAAGGAGGACGTGTTCGTGGTCCTCGAAGCATTAGAAGCTGGCAGAAGCCAGCTGCCAACTTGGACCTAACCAGTGTTGAGAGGGATACCCCAAAAAATGTCCCGGAGGAATCACCTGGTATCTTTGCCAGAGAGGAGATTAGTGCTGGTATTTTGGAAGCCACTGCTCTAAATGCTAGTAGTTCAGAGAGATCAGGCTATGAAGATGAAAGTTATCAACCAACAGGCAATAAGTATGATGATTATTTGGTGGATAATAATGATGCATTTAGTGGGAAACCTGAGAACTTCATAGACCAGAGCCACTATAATGTGGAAGATTTGGATATTGGAGATGATGTAGATGTAGATGTTGATGTTGTTGATGATGATGAAGAATATGGGCAAGTTGATGTTGATGTTGATGTTGAAGATTATATAATTGGAGGGGACTCAGATATAGGGGACAACAGAGATTACAGTGATTAA 5262 0.4323 MECGSEEENKKNTPEGENKVKRKMKSASQLELLEKTYAVEAYPGEVLRAELSEKLGLSDRQLQMWFCHRRLKDRKATPGSNKLLNDSPPTSGPVGERAEQVAKADVKHDGGVASELRPFGHPDSWRVVPQPGIMAFPIMGAAGLPAMESSSYNEPHQTREELRAIAFMERQLGEPLREDGPILGMEFDSLPPGAFGAPIGAVTMGQHRQSGRTLEAKTYEQLDKGVSSRTLHEYQFIPEQPTVKIEKYERVSPSIHFSSPDGIPHRRTLLPSGRSCLNGNESAPYGYGVQGQIPRLNLLSEQGRQNHLFPSASGGNDVLQKNPFIDATFETHNGAHPITLIDSPLMPSNRRVIHEEELSRFQRKRKIEEARMQRELEAQEKRIRKELEKQDILRQKREEQIKKEMERHNRERQKEEERLLRERQREEERLQREQRRELERREKFLQKESIRAEKLRQKEELRRVKEAARIKASNERAIARRMAKESMELIDDERLELMELAASKKGLSSILALDYETMQNLDLYQDEQTSFPPKSVQLKQAFSIQPWSDSDENVGNLLMVWKFLITFADVLGIWPFTLDELIQAFHDYDSRLLGEIHIALLRCIIKDIEDVARTPFTGLGANQNNVANSGGGHPHVVEGAYLWGFDIRNWQSHLNPLTWPEILRQFALSAGFGPKLKKRNIEQALSGNNDEGSDGKDIISNLRSGAAAKNAVAIMQEKGLSNPRRSRHRLTPGTVKYAAFHVLSLEGSKGLNILEVADKIQKSGLRDLTTSKTPEASISAALSRDTKLFERTAPSTYCVRPAYRKDPADSVAIYSAARERIRIFKSGFMDAEDVDDGEKDEDSESDVAEDPEIDDLETETDKKKEVSNSLGFSENTVIESRKDNGEVLQTTDAWPDKVDEGLAPVVAEGLNKHKIVSTSSKIAVCSNAVTISDIDGEDVDDSIPGEPWVQGLMEGEYSDLSVEERLQAFVALIGVATEGNSIRVALEERLEAANALKKQMWAEAQLDKRRIKEDYFVKMQPISYLCNKNEPAVAFLSEGGKQCALPTADVKHDKDLLTPCDQLEQTNALQENQNNLHSSPLEVNMHMQDCSTGPDNYSFQQSGYAAEKSRSILKSYIGHLAEQTYMYRALPLGLDRRRNRYWQFITSASRNDPGCGRIFVELRDGCWKLIDSEEGFDALLASLDVRGIRESYLHMMLERVEMSFKESVRRNVLNSNMRMQNGDTVRRLKTEAVEMAEQDCSADIHCPTTVGIDNLDASETSTSFVVQLGKSEADDKDACTRYQDFEKWMRKECLNSPLLCALKFGKKRCNQLLAICDVCHHVCFFGEVRCPSCHKTFSTCKNNSSSSEHIAHSEGKVKIGTDYFSPSSPLRMRLLKILLSVVEVSLPQEALLPLWTEKYRKPWSIKLEASSSTEDLLQILTALEGAIKREYLASNYETAHELLGSLSTSECPINDFIGGERIPVLPWVPCTTSAVALRLMELDACIFYTSRQKLESEKDKKIGIVVKLPSKYAAAKNSYNASATETSHQAEHEDCVDLGAGLANYSRGQRARQGRVHSCGGKSQGKVVSSRSKSRKRSTNSKNRKMGKLLGWKGRPSDQGGRVRGPRSIRSWQKPAANLDLTSVERDTPKNVPEESPGIFAREEISAGILEATALNASSSERSGYEDESYQPTGNKYDDYLVDNNDAFSGKPENFIDQSHYNVEDLDIGDDVDVDVDVVDDDEEYGQVDVDVDVEDYIIGGDSDIGDNRDYSD* 1754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3054 1753 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 945 984 IPR028942 -
Lja3g3054 1753 MobiDBLite consensus disorder prediction 1569 1583 - -
Lja3g3054 1753 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Lja3g3054 1753 Pfam DDT domain 552 607 IPR018501 -
Lja3g3054 1753 CDD homeodomain 19 75 IPR001356 GO:0003677
Lja3g3054 1753 Gene3D - 3 78 - -
Lja3g3054 1753 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Lja3g3054 1753 MobiDBLite consensus disorder prediction 832 868 - -
Lja3g3054 1753 MobiDBLite consensus disorder prediction 1547 1639 - -
Lja3g3054 1753 ProSiteProfiles HARE-type HTH domain profile. 733 802 IPR007759 GO:0006355
Lja3g3054 1753 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 5 1735 - -
Lja3g3054 1753 SMART testlast3 551 610 IPR018501 -
Lja3g3054 1753 Pfam HB1, ASXL, restriction endonuclease HTH domain 733 800 IPR007759 GO:0006355
Lja3g3054 1753 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1128 1199 IPR028941 -
Lja3g3054 1753 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 5 1735 IPR044977 GO:0006357
Lja3g3054 1753 MobiDBLite consensus disorder prediction 403 433 - -
Lja3g3054 1753 MobiDBLite consensus disorder prediction 833 856 - -
Lja3g3054 1753 SUPERFAMILY Homeodomain-like 14 75 IPR009057 -
Lja3g3054 1753 MobiDBLite consensus disorder prediction 76 98 - -
Lja3g3054 1753 MobiDBLite consensus disorder prediction 1 26 - -
Lja3g3054 1753 SMART HOX_1 18 80 IPR001356 GO:0003677
Lja3g3054 1753 ProSiteProfiles DDT domain profile. 551 610 IPR018501 -
Lja3g3054 1753 MobiDBLite consensus disorder prediction 1657 1676 - -
Lja3g3054 1753 Coils Coil 369 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3054 Lja-Chr3 57246818 57266251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3054 1 1501 Homeobox Transcription Factor Family AT5G44180 51.571 0.0 1372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lja3g3054 WSD 4.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3054 - - gmx:100797480 2303.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3054 3 57246818 57266251 Lja3g3054 3 57246818 57266251 ECH