Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3052 ATGCTTCTCTTAATTCCCTTATTCCTTTTCTTTCTCTCTCCTCCCTCACTCACTCTCTCTCTAAACCAAGATGCCCTCTTCCTCCTCCGCGCCAAGCACCAACTCTCCGACCCCGACAACTCCCTCGCCACCTGGAACACCACCGACAACAACCACACCCCCTGCTTATGGCGCGGCATCACCTGCGACCCCCTCACCGCCGCCGTCACCGCCGTGAACCTCTCCTCCACTAGCATCTCCGGCCCATTCCCCGCCGTCCTCTGCCGCCTCCCCTCCCTCTCCTCCCTCGACCTCTCCTTCAACCTCATCACCTCCACCCTCCCCTCCGCCGCCGTCTCCTCCTGCCGCAGCCTCATCCACCTCGACCTCTCCCAGAACGCACTCGTCGGCATCATCCCCGACTCCCTCTCCCTCCTCCCCTCCCTCCGCCACCTCGACCTCTCCTTCAACAACCTCACCGGCGAAATTCCGGCGAGCCTCGGCCAGCTCCGGCACCTCGAATCCCTCAACCTCGTCTACAACTTCCTCTACGGCACAATCCCGAGCTCCCTCGGGAAAATCTCAACACTAAAGGAGCTTCAACTAGCTTACAACCCGTTCACCCCGAGTCCGATACCGAGTGAACTCGGCAACCTGACTCACCTCCAGGACCTGTGGCTCGCGCAGTGCAACCTCGTGGGCTCCATTCCGAGTTCACTCGGCAACCTCACTCACCTCGCGAACCTTGACCTCTCGCAGAACAGCCTCACCGGGTCTATACCGGAATCGTTCGCGGGTCTCGCCGGCGTGACTCAGATTGAGCTTTTCGACAACTCGCTCTCCGGCGAGCTCCCAGCTGGAATCTTCTACAACCTGACCCGTCTGGAACGGTTCGACGCGTCGATGAACGAGTTGAGTGGAACGATTCCACCCGGGCTGTGCGAGTTGCAACTCGGGTCGCTCAACCTGTACCAGAACCAACTCGAAGGGCCATTGCCGGAGAGCATAGCGCGTTCTCGGAACCTCTACGAGTTGAAATTGTTCAGCAACAAGCTCGTTGGGCCGTTACCGAGTGATCTCGGGAGTAACTCGCCGTTGCAGCATATAGATGTCTCGTACAACCAATTCTCCGGCGAGATTCCGGCGAACCTGTGCCGGCAGGGGCAGTTCGAGGAGCTCATTTTGCTGTACAATTCATTTTCCGGGAAAATCCCTGAGATTCTCGGGAATTGCAAGAGTTTAACGAGGGTTCGGTTAAGGAACAACAACCTCTCTGGTGTGGTTCCTAATGCTTTCTGGGGTTTGCCCCGTTTGTATTTGCTTGAGCTTCTTGAAAATTCTCTTTCTGGGAAAATTTCTAATGCGATTTCTGGTGCTGGTAACCTTTCAATTTTGTTACTTTCCAGTAACAAGTTTTCTGGGTCGATTCCTGATGAAATTGGGTTATTGAATGGTCTTTCGAAATTTCTTGCCAGCAATAACAATCTTTCGGGTCGAATTCCGGATAGTATGTTTAGTTTGAACCAGCTGGGTAGTCTTGATCTTAGTTATAATCAACTCTCTGGTGAACTTTTGGGTGGAATTGGTCACTTGACTAAGCTAAGTGACCTTAGTTTAGCAAATAATAGGTTTGATGGACACATTCCAAGTGAATTGGGAAGTTTGTCTATGCTTAATCATCTTGATCTTTCTAGCAACTATTTTTCTGGTGAAATTCCAACACAATTGCAAAATTTGAAGCTCTACAATTTGAATTTGACAAACAACAAGCTTTCTGGGAAGATTCCTCCCCTTTTTGCCAATGACAAGTATAGGTTGAGTTTTGTGGGAAACCCTGGCCTCTGTGGCCATCTCTCGGGGCTTTGTTCAAGCTCCGGCGAGAGGAAGAACAAGAGGTGTGGGTGGATTTTCCGTGCCATATTTGTGCTTGCTGGAGTTGTTTTAATCTTTGGGGTGGCCTGGTTTTACTTGAAATACAGGAAAGCCAAGAAGTTGAAAAGGGGTTTCAACATTTCAAAATGGAGGTCGTTTCATAAGCTGGATTTTAGTGAGTTTGAGGTTGTGAAATTGCTGAGTGAAGACAATGTAATAGGAAGCGGAGCGTCTGGGAAGGTCTACAAGGTGGTGCTCAGCAATGGTGAGGTGGTGGCGGTGAAGAAATTGCGTGGAGCATCTATGAAAGTGAAGGAGAATGGTTGTTCCGGAAAAGATGAATTTGATGCTGAAGTTGAAACACTGGGAAAGATTAGGCACAAGAATATTGTGAGGTTGTGGTGTTGCTACAACAATGGTGAGATCAAGCTTCTGGTTTATGAATACATGCCAAATGGGAGCTTGGCTGATATGTTGAAGAATAGCAAAAAAAACTTGGGTTGGCCAACTAGGTATAAAATTGCTGTTGATGCTGCTGAGGGGCTATCTTATTTGCATCATGATTGTGTCCCACCCATTGTTCACAGGGATGTGAAATCTAGCAATATTTTGGTTGATCGAGAGTTTGTGGCAAAAGTTTCTGATTTTGGAGTTGCCAAAATTGTTACAGGAGTTAGCCAAGGGGGAGAGTCCATGTCTGTGATTGCTGGATCTTGTGGCTACATTGCACCAGAATACGCTTATACACTAAGGGTGAGTGAAAAGAGTGATATTTATAGCTTTGGCGTGGTCATTTTGGAGTTGGTAACAGGTAAACCTCCTATTGATGCAGAGTATGGGGAAAATGATTTGGTAAAATGGGTTTGCTCCACTTTGGAACAGAAAGGTTTGAATCATGTGATAGATCCTACTCTTGACTCTAAATACAAGGAAGAAATCAGCAAGGTACTTAGAGTGGGGATTGAATGCACCAGCTATCTTCCCATATCTCGCCCTTCAATGAGGTGTGTGGTGAAAATGCTTCAGGAGGTAAAAACAGTTCCTAAAGGCTAA 2904 0.4869 MLLLIPLFLFFLSPPSLTLSLNQDALFLLRAKHQLSDPDNSLATWNTTDNNHTPCLWRGITCDPLTAAVTAVNLSSTSISGPFPAVLCRLPSLSSLDLSFNLITSTLPSAAVSSCRSLIHLDLSQNALVGIIPDSLSLLPSLRHLDLSFNNLTGEIPASLGQLRHLESLNLVYNFLYGTIPSSLGKISTLKELQLAYNPFTPSPIPSELGNLTHLQDLWLAQCNLVGSIPSSLGNLTHLANLDLSQNSLTGSIPESFAGLAGVTQIELFDNSLSGELPAGIFYNLTRLERFDASMNELSGTIPPGLCELQLGSLNLYQNQLEGPLPESIARSRNLYELKLFSNKLVGPLPSDLGSNSPLQHIDVSYNQFSGEIPANLCRQGQFEELILLYNSFSGKIPEILGNCKSLTRVRLRNNNLSGVVPNAFWGLPRLYLLELLENSLSGKISNAISGAGNLSILLLSSNKFSGSIPDEIGLLNGLSKFLASNNNLSGRIPDSMFSLNQLGSLDLSYNQLSGELLGGIGHLTKLSDLSLANNRFDGHIPSELGSLSMLNHLDLSSNYFSGEIPTQLQNLKLYNLNLTNNKLSGKIPPLFANDKYRLSFVGNPGLCGHLSGLCSSSGERKNKRCGWIFRAIFVLAGVVLIFGVAWFYLKYRKAKKLKRGFNISKWRSFHKLDFSEFEVVKLLSEDNVIGSGASGKVYKVVLSNGEVVAVKKLRGASMKVKENGCSGKDEFDAEVETLGKIRHKNIVRLWCCYNNGEIKLLVYEYMPNGSLADMLKNSKKNLGWPTRYKIAVDAAEGLSYLHHDCVPPIVHRDVKSSNILVDREFVAKVSDFGVAKIVTGVSQGGESMSVIAGSCGYIAPEYAYTLRVSEKSDIYSFGVVILELVTGKPPIDAEYGENDLVKWVCSTLEQKGLNHVIDPTLDSKYKEEISKVLRVGIECTSYLPISRPSMRCVVKMLQEVKTVPKG* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3052 967 Pfam Protein kinase domain 686 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3052 967 Gene3D Transferase(Phosphotransferase) domain 1 767 966 - -
Lja3g3052 967 SUPERFAMILY Protein kinase-like (PK-like) 683 959 IPR011009 -
Lja3g3052 967 SUPERFAMILY RNI-like 70 378 - -
Lja3g3052 967 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1 963 - -
Lja3g3052 967 Pfam Leucine rich repeat N-terminal domain 22 63 IPR013210 -
Lja3g3052 967 Gene3D Ribonuclease Inhibitor 259 618 IPR032675 -
Lja3g3052 967 Gene3D Ribonuclease Inhibitor 21 183 IPR032675 -
Lja3g3052 967 PRINTS Leucine-rich repeat signature 500 513 - -
Lja3g3052 967 PRINTS Leucine-rich repeat signature 239 252 - -
Lja3g3052 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Lja3g3052 967 SMART serkin_6 684 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3052 967 PANTHER RECEPTOR-LIKE PROTEIN KINASE 5 1 963 - -
Lja3g3052 967 ProSiteProfiles Leucine-rich repeat profile. 141 163 IPR001611 GO:0005515
Lja3g3052 967 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524
Lja3g3052 967 Gene3D Ribonuclease Inhibitor 188 258 IPR032675 -
Lja3g3052 967 Pfam Leucine rich repeat 406 465 IPR001611 GO:0005515
Lja3g3052 967 Pfam Leucine rich repeat 91 152 IPR001611 GO:0005515
Lja3g3052 967 Pfam Leucine rich repeat 214 273 IPR001611 GO:0005515
Lja3g3052 967 Gene3D Phosphorylase Kinase; domain 1 666 766 - -
Lja3g3052 967 ProSiteProfiles Protein kinase domain profile. 684 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3052 967 SUPERFAMILY L domain-like 311 611 - -
Lja3g3052 967 SMART LRR_typ_2 524 548 IPR003591 -
Lja3g3052 967 SMART LRR_typ_2 90 114 IPR003591 -
Lja3g3052 967 SMART LRR_typ_2 139 163 IPR003591 -
Lja3g3052 967 SMART LRR_typ_2 285 309 IPR003591 -
Lja3g3052 967 SMART LRR_typ_2 236 259 IPR003591 -
Lja3g3052 967 SMART LRR_typ_2 404 427 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3052 Lja-Chr3 57177729 57181875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3052 18 961 Receptor kinase-like Gene Family AT1G28440 60.293 0.0 1120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja3g3052 Pkinase 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3052 - - ccaj:109805711 1282.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3052 3 57177729 57181875 Lja3g3052 3 57177729 57181875 ECH