Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3049 ATGGATGAAGGATCAGAAATCACAAATGGTTTCCCTCATCAGAACCAAACTACTGGTTCATCTAACAATCTTCCTGTTTTGAAGAGGAAGAGAAACCTTCCAGGAAACCCAGATCCTGAAGCTGAAGTGATAGCCTTATCACCAAAGACTTTGATGGCCACCAACAGATTCTTGTGTGAAACATGTGGGAAGGGCTTTCAAAGGGATCAGAATCTTCAGCTCCATCGACGCGGACACAACCTTCCATGGAAGCTCAAGCAAAGGACAAACAAAGAACCGAGGAAGAGAGTTTATGTGTGTCCAGAGAAGAGTTGTGTCCACCATGATCCTTCAAGGGCTCTTGGAGACTTAACTGGGATCAAAAAGCACTTTTGCAGAAAGCATGGAGAAAAGAAGTGGAAGTGCGACAAGTGCTCAAAGCGTTATGCTGTGCAGTCTGATTGGAAAGCCCACTCAAAAACCTGTGGCACCAGAGAATACAAGTGTGATTGTGGAACTATCTTTTCAAGGAGGGATAGCTTCATCACCCACAGGGCCTTCTGTGATGCTTTGGCAGAAGAAACAGCTAGGGTAAATGCAACATCAGACATACACAACACCTTAGGGGGTAACATTGGTTACAATAATGTAATGGGAGCATCCCTAGGTCCAAACATGTCCACTCATTTTTCTTCTATCTTCAAGCCAATAATATCAACCACTGACGAAACAAGCAATAATCAAACATCCAGAGGGATATCCCTTTGGATGAACCATGCATCTCAAGCTCATGAAACAATAGCTAATAATTTGCATCATGAGATTCATGAACTTGGCTCTGCAACAACCTCATCAAATGAAATATATGGTGGGAACCCACTTGTCCAATGCTCAAACAATCCTCCACATTCCAATTATCATCTAAATTGGGTGTTTGGAACCAAGCTTTCTCCCATTGGAAGCCAAGAGTTTACTACTAGCAATATTGGTAGTACTACATCACTTCCACTAGGAAACAACATTGTTAAAGATGCTGCAAGCCAAGTGACAAGTGTTCCTTCATTGTACAGCTCCCAACACCAATCATCACATCAAACAACAACATCTTCATCATCAGCAAACATGTCAGCCACAGCTTTGTTGCAGAAAGCTGCACAGATTGGAGCAACCTCAACAACTGACCCATCATTCCTTGGGAGCTTAGGTTTGAAATGCAGTAATAACACCAGTCAAGTACTACAAGATGGGAACAAATTTAATGCTGTGTGCGGTTCAGGTTCAGTGCTCAGTTTCACCAGCATTGGGAGTGAGGCAGAGAGCTCTGCATTGTGTGACTTCTCACAAATGCACCCTGCCAAACGCAGACATGTTCAGAGTGAAGAGGGTGGAGGGGGGCAAACTAGGGATTTTCTTGGGGTTGGTGTGCAAACCCTTTACCACCCTTCAACAATCAATGGGTGGATTTGA 1446 0.4364 MDEGSEITNGFPHQNQTTGSSNNLPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEPRKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNATSDIHNTLGGNIGYNNVMGASLGPNMSTHFSSIFKPIISTTDETSNNQTSRGISLWMNHASQAHETIANNLHHEIHELGSATTSSNEIYGGNPLVQCSNNPPHSNYHLNWVFGTKLSPIGSQEFTTSNIGSTTSLPLGNNIVKDAASQVTSVPSLYSSQHQSSHQTTTSSSSANMSATALLQKAAQIGATSTTDPSFLGSLGLKCSNNTSQVLQDGNKFNAVCGSGSVLSFTSIGSEAESSALCDFSQMHPAKRRHVQSEEGGGGQTRDFLGVGVQTLYHPSTINGWI* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3049 481 MobiDBLite consensus disorder prediction 1 40 - -
Lja3g3049 481 Gene3D Classic Zinc Finger 126 193 - -
Lja3g3049 481 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Lja3g3049 481 PANTHER F-BOX ASSOCIATED PROTEIN 22 478 - -
Lja3g3049 481 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 478 - -
Lja3g3049 481 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Lja3g3049 481 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Lja3g3049 481 MobiDBLite consensus disorder prediction 8 27 - -
Lja3g3049 481 Gene3D Classic Zinc Finger 36 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3049 Lja-Chr3 57147161 57149983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3049 23 481 IDZ Gene Family AT1G03840 52.465 4.45e-144 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g3049 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3049 K25870 - gmx:100790620 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3049 3 57147161 57149983 Lja3g3049 3 57147161 57149983 ECH