Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3041 ATGGAATTCAATCATGAAGACAATGCTACTAAACTATTTCAAGCTCAATCCCACGTATTCAATCACATTTTCAGTTTCATAAACTCTATGTCTCTTAAGTGTGCAATTGACTTGTGCATACCAGATATCATACATAACTATGTTCAACCCATGCCACTTTCAAAACTCATTGCTTCTCTACCAATCCACCCCTCTAAAACCAAAAGCATCTTTCGCTTGATGCGAATTTTGACCAATTCTGGATTCTTTATTCAGCACAATGTCACAGAAAATGAGCTTGAAGTGAGGTATGAGCTAACTGATGCATCTAGACTACTTATTAAGGACCACCCCTTCAGTATGTCATCTTCACTGCATTGCATACTTGATCCAATTTTAACTGAGCCATGGTATCAATTTTCTACTTGGTTCAAAAATGAAGATCCTACACCTTTTTACACAAAGAATGGGATGTCATTTTGGGAATATTTTAGCCATAACCCCAAACACAGGCACAGATTCAATGATGCCATGGCTAGTGACACTCGATTGGTTTCAAGTGCAGTCATGGAAAAGTGCAAAGGGGTGTTCAAGGGATTGGAGACACTGGTTGATGTTGGGGGAGGCACTGGGACTTTTGCTAAGGCAATAGCTAAGTCATTCCCACAACTTGAGTGCATTGTATTTGATCTCCCACATGTTGTCTCTGGCTTGCAAGGAAGTGAAAACATTAAATATGTTGGAGGGAACATGTTTGAGGCAATTCCTGCAACTGATTCCATTTTGTTGAAGTGGATACTGCATGATTGGAATGATGAAGAATGCATGAAAATATTGAAGAACTGCAAGGAGGCAATCTCAAAAAAAGGTAAAAGGGGAAAGGTGATCATCATAGACGTGGTGATTGGGAATGAGAAGGGAGATAGTGAATCAATTGAAACGAAGCTCTTTTACGACTTGGAGATGATGGCATTGCTCGGTGGCAAAGAGAGAGATGAGAAAGAATGGGCCAAGTTAATTTTCTCTGTTGGCTTCAGTAACTACAAGATAACTCCAGTTCTTGGTCTCAGGTCTCTCATTGAGGTGTATCCATAG 1074 0.3994 MEFNHEDNATKLFQAQSHVFNHIFSFINSMSLKCAIDLCIPDIIHNYVQPMPLSKLIASLPIHPSKTKSIFRLMRILTNSGFFIQHNVTENELEVRYELTDASRLLIKDHPFSMSSSLHCILDPILTEPWYQFSTWFKNEDPTPFYTKNGMSFWEYFSHNPKHRHRFNDAMASDTRLVSSAVMEKCKGVFKGLETLVDVGGGTGTFAKAIAKSFPQLECIVFDLPHVVSGLQGSENIKYVGGNMFEAIPATDSILLKWILHDWNDEECMKILKNCKEAISKKGKRGKVIIIDVVIGNEKGDSESIETKLFYDLEMMALLGGKERDEKEWAKLIFSVGFSNYKITPVLGLRSLIEVYP* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3041 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Lja3g3041 357 PANTHER ORCINOL O-METHYLTRANSFERASE 7 357 - -
Lja3g3041 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 357 IPR016461 GO:0008168
Lja3g3041 357 PANTHER O-METHYLTRANSFERASE 7 357 IPR016461 GO:0008168
Lja3g3041 357 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Lja3g3041 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 356 IPR029063 -
Lja3g3041 357 Pfam O-methyltransferase domain 130 339 IPR001077 GO:0008171
Lja3g3041 357 Gene3D Vaccinia Virus protein VP39 107 357 IPR029063 -
Lja3g3041 357 SUPERFAMILY "Winged helix" DNA-binding domain 11 111 IPR036390 -
Lja3g3041 357 CDD AdoMet_MTases 195 296 - -
Lja3g3041 357 Gene3D - 2 106 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3041 Lja-Chr3 56894964 56896603 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3041 30 343 Monolignol Biosynthesis Gene Families AT5G54160 34.062 4.60e-53 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3041 - K16040 gmx:100793263 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3041 3 56894964 56896603 Lja3g3041 3 56894964 56896603 ECH