Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3040 ATGGTGTTCAATGGTGAAGACAGTGGTGCTAAACTGTTTCAAGCTCAATCCCACGTGTTCAATCACATTTATAGTTTCATAAACTCTATGTCCCTTAAATGTGCAGTTGAATTATGCATACCAGATATCATACATGATTATGCTCAACCCATGCCACTTTCACAACTCATTGCTTCTCTTCCGATCCACCCCTCCAAAACCAGTGGCATCTATCGCTTGATGCAAAATTTGACCAATTTGGGATTCTTTACTCAGCTAAATGTATCTGAAAACCAGCATGAAGTGAGCTATGAGCTTACTGATGCATCTAGATTACTTCTTAAGGATCACCCCTTTAATATGACATCTTTCTTGAATATCACACTTGACCCAATTTTGGCTAAGCCATGGTATCAACTTTCAACATGGTTCAAAAATGATGATCCTACACCTTTTTACACAAAACATGGGATGTCATTATGGGAATATGCTGCCTATAACCCCAAACTCAATCACTTATTCAATGATGCCATGGCTAGTAGTGATATGCAATTGGTTTCCTCTGTGGTGATGGAGAAATGTAATGGGGTGTTCCATGGATTGGAGACACTGGTTGATGTTGGGGGAGGCACAGGGAATTTTGTTAAGGCCATTGCCAAATCATTCCCACAACTTGAATGCATTGTATTTGATCTCCCACATGTTGTTGCTGGCTTGCAAGGTAGTGAAAACATTAAATATGTTGGAGGGAACATGTTTGAGGCAACTCCTCCTGCCAATGCAATTTTGTTGAAGTGGATATTGCATGATTGGAACGATGAAAAATGCTTGAAAATACTGAAGAATTGCAAGGAGGCACTCTCAAGAGAAGGAAAATTGATAATCATAGACGTGGTCATCGAGAATGAGAAGGGAGATAGTAATTTTTTTGAAACAAAGCTCTTCTATAATTTGGATATGATGACATTGTTTGATGGGAAAGAGAGAAATGAGAAAGATTTGGCCGAACTGTTTTTCTCAGTAGGCTTCAGTAACTTCAAGATAACCCCAGTTCTAGGCTTCAGATCTCTCATTGAGGTGTATCCCTAG 1068 0.3933 MVFNGEDSGAKLFQAQSHVFNHIYSFINSMSLKCAVELCIPDIIHDYAQPMPLSQLIASLPIHPSKTSGIYRLMQNLTNLGFFTQLNVSENQHEVSYELTDASRLLLKDHPFNMTSFLNITLDPILAKPWYQLSTWFKNDDPTPFYTKHGMSLWEYAAYNPKLNHLFNDAMASSDMQLVSSVVMEKCNGVFHGLETLVDVGGGTGNFVKAIAKSFPQLECIVFDLPHVVAGLQGSENIKYVGGNMFEATPPANAILLKWILHDWNDEKCLKILKNCKEALSREGKLIIIDVVIENEKGDSNFFETKLFYNLDMMTLFDGKERNEKDLAELFFSVGFSNFKITPVLGFRSLIEVYP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3040 355 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 355 IPR016461 GO:0008168
Lja3g3040 355 PIRSF O-mtase 3 355 IPR016461 GO:0008168
Lja3g3040 355 PANTHER ORCINOL O-METHYLTRANSFERASE 8 355 - -
Lja3g3040 355 Pfam O-methyltransferase domain 130 337 IPR001077 GO:0008171
Lja3g3040 355 Gene3D Vaccinia Virus protein VP39 107 355 IPR029063 -
Lja3g3040 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 354 IPR029063 -
Lja3g3040 355 PANTHER O-METHYLTRANSFERASE 8 355 IPR016461 GO:0008168
Lja3g3040 355 CDD AdoMet_MTases 196 293 - -
Lja3g3040 355 Pfam Dimerisation domain 30 77 IPR012967 GO:0046983
Lja3g3040 355 Gene3D - 3 106 IPR036388 -
Lja3g3040 355 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3040 Lja-Chr3 56882101 56883723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3040 30 341 Monolignol Biosynthesis Gene Families AT5G54160 34.796 5.56e-53 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3040 - K16040 lja:Lj0g3v0213609.1 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3040 3 56882101 56883723 Lja3g3040 3 56882101 56883723 ECH