Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3039 ATGGAATTCTGTGGTGATGTTAATGCTACTAAACTATTTCAAGCTCAATCCCACGTATTCAATCACATTTTCAGTTTCATAAACTCTCTGTCCCTTAAATGTGCAATTGACTTGTGCATACCAGATATCATCCATAACTATGCTCAACCCATGCCACTTTCTAAACTCATTGCTTCTCTACCAATCCACCCCTCCAAAACCAACAGCATCCATCGCTTGATGCGAATTTTGACCCATTCTGGATTCTTCACTCAGCAGAATGTCACTGAAAATGAGCTTGAAGTGAGGTATGAGCTAACCGATGCATCTAGACTACTAATTAAGCAAAACCACCCCTTTAATATGACCTCTTACATGAATATTGTACTTGATCCAATTTTAGTTGAGCCATGGTATCAACTCTCTGCTTGGTTCAAAAATGAAGATCCTACACCTTTTTACACAAAACATGGGATGTCATTATGGGAATATGCTGTCCATAACCCCAAACTCGGTCACAGATTCAACGATGCCATGGCTAGTGAAACTGGATTGACTTCCAGTGCGATCATGGAGAAGTGTAAGGGGGTGTTCAAGGGATTGGAGTCATTGGTTGATGTTGGTGGAGGCATAGGGACTATGGCTAAGGCTATTGCCAAATCATTCCCACAACTTCAATGCATTGTATTTGATCTTCCACATGTTGTTGCTGACTTGCAAGGAAGTGAAAACATAAAATATGTTGGAGGGGACATGTTTGAGGCAATTCCTCCAACCGATTCCATTTTATTGAAGGGTGTATTACATGATTGGAACGATGAAGAATGCTTGAAAATACTGAAGAAATGCAAGGAGGCAATCTCAAGAAAAGGTAAAAAAGGAAAGGTGATCATCATCGATGTAGTGATCAGGAATGAGAAGGAAGATAGTGAGTCTTTTGAAACAAAGCTCTTCTATGATTTGGCAATGATGACATTAGTCGATGGGAAAGAGAGAAATGAGAAAGAATGGGCCAAACTTTTTTTCTCAGTAGGCTTCAGTGACTACAAGATAAGTCCAGCATTAGGCTTCAAATCTCTCATTGAGGTTTATCCGTAA 1077 0.3983 MEFCGDVNATKLFQAQSHVFNHIFSFINSLSLKCAIDLCIPDIIHNYAQPMPLSKLIASLPIHPSKTNSIHRLMRILTHSGFFTQQNVTENELEVRYELTDASRLLIKQNHPFNMTSYMNIVLDPILVEPWYQLSAWFKNEDPTPFYTKHGMSLWEYAVHNPKLGHRFNDAMASETGLTSSAIMEKCKGVFKGLESLVDVGGGIGTMAKAIAKSFPQLQCIVFDLPHVVADLQGSENIKYVGGDMFEAIPPTDSILLKGVLHDWNDEECLKILKKCKEAISRKGKKGKVIIIDVVIRNEKEDSESFETKLFYDLAMMTLVDGKERNEKEWAKLFFSVGFSDYKISPALGFKSLIEVYP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3039 358 PIRSF O-mtase 4 358 IPR016461 GO:0008168
Lja3g3039 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 358 IPR016461 GO:0008168
Lja3g3039 358 PANTHER O-METHYLTRANSFERASE 7 358 IPR016461 GO:0008168
Lja3g3039 358 Gene3D Vaccinia Virus protein VP39 109 358 IPR029063 -
Lja3g3039 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 357 IPR029063 -
Lja3g3039 358 SUPERFAMILY "Winged helix" DNA-binding domain 11 110 IPR036390 -
Lja3g3039 358 Pfam Dimerisation domain 31 78 IPR012967 GO:0046983
Lja3g3039 358 Gene3D - 5 106 IPR036388 -
Lja3g3039 358 PANTHER ORCINOL O-METHYLTRANSFERASE 7 358 - -
Lja3g3039 358 Pfam O-methyltransferase domain 131 340 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3039 Lja-Chr3 56841390 56843944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3039 30 344 Monolignol Biosynthesis Gene Families AT5G54160 34.169 4.20e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3039 - K16040 gmx:100781008 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3039 3 56841390 56843944 Lja3g3039 3 56841390 56843944 ECH