Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3027 ATGGCGGTGGGTCCTCTTCTTCTTCGCTCTCTCTGGTCCTCCACCAGAAAATCCCTATCCTCCTCTTCCCCTTCTCCTCCCTCTCGCTTCTTCTCACGCCCCTTTTCCGCCGCTTCCGCCGCCGCCGCCGCGTCCGCCACCGCCCCCGCTGGATCCCTCGACCCCAACCGCCTTCGCAACGTGGCAGTGATCGCTCATGTCGATCACGGCAAGACCACCCTCATGGACCGCATCCTCCGCCAGTGCGGCGCCGACATCCCCCACGAGCGCGCCATGGATTCCAATTCCCTCGAACGCGAGCGCGGTATCACCATCGCTTCCAAGGTTACCACTGTTTCGTGGAAAGAGAATGAGCTCAACATGGTGGATACTCCTGGACACGCTGATTTTGGTGGTGAGGTTGAACGTGTTGTTGGTATGGTTGAGGGAGCAGTTTTGGTCGTTGATGCTGGTGAAGGTCCACTTGCGCAGACAAAATTTGTTCTTGCGAAAGCATTGAAGTATGGGTTGCGGCCTCTTCTTCTTTTAAACAAAGTAGACCGACCTTCAGTTACTGAAGAGACATGTGATGAAGTTGAGAGTCTGGTGTTTGATCTATTTGCCAACCTGGGTGCTACAGAGGAGCAACTTGACTTTCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTTTACCAAGGATCCTCCTGCCGAGGCCAGAAATATGTCACAGTTGCTTGATGCCATTGTATCACATGTCAAACCACCAAACACAAGCATTGATGCACCTTTTCAAATGCTGGTTTCAATGATGGAAAAAGACTTCTATCTTGGGCGAATTTTGACTGGACGTGTGTATTCTGGGGTTGTACGTCTTGGCGACAGGGTTCATGGGCTACGTCATAAAGATTCTGGTGTCGAAAAGATTGAAGAGGGAAAGGTGGTGAAGCTGATGAAAAAGAAGGGTACAAGCATGGTTCTAATTGATAGTGCTGGAGCTGGCGATATAATTTCAGTTGCTGGCTTGGCAAGTCCATCAATAGGCCATACAGTTTCAACTGTTGAGGTTATGTCTGCATTGCCCACAGTTGTGTTGGACCCCCCAACAATTTCCATGACTTTTGGTGTAAATGACTCCCCTTTAGCTGGTCGTGATGGCACTCATTTGACTGGGGGAAGAATTGGTGACCGACTGTTGGCTGAATCTGAGACCAACCTTGCTATAAATGTGCTTCCAGGCTTATCAGAAACATATGAAGTGCAGGGAAGAGGAGAGCTACAGCTGGGTATTTTAATTGAAAATATGAGACGTGAGGGATTTGAGTTATCTGTCTCTCCACCTAAAGTCATGTATAAAACAGAAAAGGGTCAGAAACTTGAGCCAGTAGAAGAAGTTACAATTGAGGTAAATGATGAGCATGTTGGCTTGGTAATGGAGGCCTTGTCTCACAGACGAGCTGAGATTACAGACATGGGACCTGTATCGGGAACTGTTGGTCGAACTAGATTGTCTTTGACTTGTCCATCTAGGGGCCTGGTTGGTTATCGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGGTTCATGCATCGTGCTTTCCTTGAATATGAAAAATATCGAGGCCCTCTTGGCAATGTTAGGAAAGGAGTATTGGTGTCTATGGGTTTTGGCACAGTCACAGCTCATGCATTGATGAGCTTAGAAGCTCGAGGGACTCTTTTTGTAGCCCCTGGAATGGATGCCTATGATGGAATGATTGTTGGAGAACATTCACGAGAAACAGATCTTGATGTCAATCCAGTTAGATCTAAAGAACTCACAAATATTCGTGCTGCTTCCAAGGATGAGAATGTGAAGCTGACTCCTCCTCGCCTTATGACGCTTGAAGAAGCTATAGGGTATGTAGCATCAGACGAGCTTATTGAGGTTACACCAAAGGCCATCCGGTTACGGAAGAAATACCTTGATGTGAACAAGCGCAAAACAATGAGTAAAAGGCCAAAGGAATGA 2001 0.4793 MAVGPLLLRSLWSSTRKSLSSSSPSPPSRFFSRPFSAASAAAAASATAPAGSLDPNRLRNVAVIAHVDHGKTTLMDRILRQCGADIPHERAMDSNSLERERGITIASKVTTVSWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPLLLLNKVDRPSVTEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPAEARNMSQLLDAIVSHVKPPNTSIDAPFQMLVSMMEKDFYLGRILTGRVYSGVVRLGDRVHGLRHKDSGVEKIEEGKVVKLMKKKGTSMVLIDSAGAGDIISVAGLASPSIGHTVSTVEVMSALPTVVLDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLLAESETNLAINVLPGLSETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTEKGQKLEPVEEVTIEVNDEHVGLVMEALSHRRAEITDMGPVSGTVGRTRLSLTCPSRGLVGYRSVFSSDTRGTGFMHRAFLEYEKYRGPLGNVRKGVLVSMGFGTVTAHALMSLEARGTLFVAPGMDAYDGMIVGEHSRETDLDVNPVRSKELTNIRAASKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVNKRKTMSKRPKE* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3027 666 Gene3D bipa protein 543 658 IPR042116 -
Lja3g3027 666 Gene3D Elongation Factor G (Translational Gtpase), domain 3 366 650 - -
Lja3g3027 666 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 6 665 - -
Lja3g3027 666 CDD BipA_TypA_II 261 358 - -
Lja3g3027 666 SUPERFAMILY Translation proteins 203 358 IPR009000 -
Lja3g3027 666 Gene3D - 448 542 - -
Lja3g3027 666 Gene3D Translation factors 256 359 - -
Lja3g3027 666 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 56 254 IPR000795 GO:0003924|GO:0005525
Lja3g3027 666 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 58 658 IPR006298 GO:0005525
Lja3g3027 666 CDD TypA_BipA 58 253 - -
Lja3g3027 666 SUPERFAMILY EF-G C-terminal domain-like 363 446 IPR035647 -
Lja3g3027 666 PANTHER ELONGATION FACTOR FAMILY PROTEIN 6 665 - -
Lja3g3027 666 CDD BipA_III 365 442 - -
Lja3g3027 666 TIGRFAM small_GTP: small GTP-binding protein domain 59 198 IPR005225 GO:0005525
Lja3g3027 666 Gene3D - 56 254 IPR027417 -
Lja3g3027 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 263 IPR027417 -
Lja3g3027 666 Pfam Elongation factor G C-terminus 455 538 IPR000640 -
Lja3g3027 666 PRINTS GTP-binding elongation factor signature 120 130 IPR000795 GO:0003924|GO:0005525
Lja3g3027 666 PRINTS GTP-binding elongation factor signature 136 147 IPR000795 GO:0003924|GO:0005525
Lja3g3027 666 PRINTS GTP-binding elongation factor signature 100 108 IPR000795 GO:0003924|GO:0005525
Lja3g3027 666 PRINTS GTP-binding elongation factor signature 172 181 IPR000795 GO:0003924|GO:0005525
Lja3g3027 666 PRINTS GTP-binding elongation factor signature 60 73 IPR000795 GO:0003924|GO:0005525
Lja3g3027 666 CDD BipA_TypA_C 457 537 IPR035651 -
Lja3g3027 666 SUPERFAMILY EF-G C-terminal domain-like 457 572 IPR035647 -
Lja3g3027 666 Pfam Elongation factor Tu domain 2 275 348 IPR004161 GO:0005525
Lja3g3027 666 Pfam Elongation factor Tu GTP binding domain 57 251 IPR000795 GO:0003924|GO:0005525
Lja3g3027 666 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 93 108 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3027 Lja-Chr3 56525128 56537987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3027 57 181 Eukaryotic Initiation Factors Gene Family AT3G22980 41.221 2.98e-24 106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3027 3 56525128 56537987 Lja3g3027 3 56525128 56537987 ECH