Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3017 ATGAGAAACATCGTATCTCTTCTTCTTCTCTTTTGTTTGTTTATCATAGTTGTCTCTGGTCATCATCGTCACGATTACTACGAGGATCCAGTTGGGGAAGATGATGAAGCAGATAACAGGGAATTGATCAACAACAAGATAATGTTATTTTCCATGGTTTTCTTTTCACTAATCCTAGTTCTTGTTGTCTTCTCACATTACTTCTACTCCACATGTGTCCACATTCGACGCCAATCTCGCCGTAGAGAAGCCATTAATCGAGTCAGCATCACCCTGCAACAGCTCCATCTCACCGAGCCACCCACTGCAGGGCTTGACGTCTCCTTCATCGCAGCGCTTCCGGTGTTTGTCATTGAATCAAAACCTCAAGAAGATCAAGATCATGATGTCCCTTTTTGTGTTGTGTGCTTGAGTGATTTGGAAGAGAAACAAGTAGCCAAGTTGCTTCCGAATTGCAACCACTCTTTCCATGTTGATTGCATAGATACTTGGTTGGGCTTGCACACCACATGCCCTTTGTGTCGTGCTTGGGTACAACCACAGTTGGAGCCGCAGAACCGTGAGGGCCCTACACCTGGAAGGGCAATCGACGGTCCGCAACCCTCCTTGGTTCTACCCATCTCGGAACCCTCTGAAGGCACGTCAGAGGGTGGTGTTGTTGAGGAACCCAAAATTGATGGTTTGGGTTCGCAATTAAGCTCGTTCCGAAGGGTTCGTAGCATGGAAAGATCTTTGATCCAAGCGTATAGCCATGATGTTGTTGATGAAGATTTGGAGAGGCAATGA 786 0.4631 MRNIVSLLLLFCLFIIVVSGHHRHDYYEDPVGEDDEADNRELINNKIMLFSMVFFSLILVLVVFSHYFYSTCVHIRRQSRRREAINRVSITLQQLHLTEPPTAGLDVSFIAALPVFVIESKPQEDQDHDVPFCVVCLSDLEEKQVAKLLPNCNHSFHVDCIDTWLGLHTTCPLCRAWVQPQLEPQNREGPTPGRAIDGPQPSLVLPISEPSEGTSEGGVVEEPKIDGLGSQLSSFRRVRSMERSLIQAYSHDVVDEDLERQ* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3017 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 181 IPR013083 -
Lja3g3017 261 PANTHER RING FINGER DOMAIN-CONTAINING 32 261 - -
Lja3g3017 261 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 32 261 - -
Lja3g3017 261 MobiDBLite consensus disorder prediction 184 225 - -
Lja3g3017 261 SMART ring_2 133 174 IPR001841 -
Lja3g3017 261 SUPERFAMILY RING/U-box 122 184 - -
Lja3g3017 261 Pfam Ring finger domain 133 175 IPR001841 -
Lja3g3017 261 CDD RING-H2_PA-TM-RING 133 175 - -
Lja3g3017 261 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3017 Lja-Chr3 56291801 56292586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3017 24 257 C3H Transcription Factor Family AT2G42360 34.711 3.39e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3017 K19038 - gmx:100783358 175.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3017 3 56291801 56292586 Lja3g3017 3 56291801 56292586 ECH