Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3016 ATGGCTTCCTTAGCACTAACCCCAGCTATTCTCTTGTTAATTTATCTCTTGGTCAGGTTTGTTGTCTTAAGGAACCCATCTCGTCGCCAAACCCTGCAGCTTCATGACCTCGAACTACCGTCCAGAGGGCTTGATCCTACCATCATCGCGTCATTTCCAGTTTTCATCATTGAAGAAAAAACTCAAGAAGAAGCTGATGGTGTGTCTGTGGCGGAGGATTGTGTTGTATGCTTGAGTGGTTTAGAGGAAAACGAAATGGCCAAGATGCTTCCAAATTGCAAGCATCTTTTCCATGTCGGTTGCATAGACACTTGGTTGGCTTCAAACATGACATGCCCATTGTGTCGAGCCACGGTCGAGCCACTGCTTGAGCCACACCTCTGTGAGGGTTCTTCTAGCAATGACAATAATGGTTCATTGTCTTTGGTTGTTTAA 435 0.4552 MASLALTPAILLLIYLLVRFVVLRNPSRRQTLQLHDLELPSRGLDPTIIASFPVFIIEEKTQEEADGVSVAEDCVVCLSGLEENEMAKMLPNCKHLFHVGCIDTWLASNMTCPLCRATVEPLLEPHLCEGSSSNDNNGSLSLVV* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3016 144 PANTHER RING FINGER DOMAIN-CONTAINING 33 133 - -
Lja3g3016 144 Pfam Ring finger domain 73 116 IPR001841 -
Lja3g3016 144 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Lja3g3016 144 SMART ring_2 74 115 IPR001841 -
Lja3g3016 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 122 IPR013083 -
Lja3g3016 144 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 33 133 - -
Lja3g3016 144 SUPERFAMILY RING/U-box 52 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3016 Lja-Chr3 56250831 56251265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3016 1 130 C3H Transcription Factor Family AT2G42360 45.324 4.94e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3016 K19038 - twl:119984422 114.39