Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3015 ATGAAAAGCACAGTGGGAGAGATAAATGAAGTAGAAGGAGGACACTTTGTGCGATCCACAGGTAGAAAAGATCGACACAGCAAGGTTCACACTTCAAAAGGCCCTCGCGATCGCAGGGTTCGGCTAGCAGCTCACACAGCCATTGAGTTCTATGATGTTCAAGACCGCCTAGGCTACGACCGACCCAGCAAGGCTATGGATTGGCTCATCAAGAAAGCAAAGCCTTCAATTGACAAACTAGTTGAAGCTCAGAGTGCAGGATCAAGTAACAGTTCAGCCTCTGTTCAATTTCCACCACATTTTGATACAGATCACATAACTTTCTTTCCTACAATCTTCAAAGCCTCAAGCACCAACAACTCCACACAAGACTTTGGCCTCTCTCTTAACTCTTTCCAGCACCACCCTGGTCTGATTCCTTGGCAATCACAACAAGGAGGTGAAAATCATGCAGCTTCAAATGAACATCAAACCTTTTTTGCTGGCTCAACTGATCCAGTTGGGTTTCGGAACCATTATCATCAGAGAATTCTGACTTGGAATTGGAACAATGAAGCAACCTCGGATCATGTAAACAAAGTGGGGTTCAAGGTCAACTCAGAGCAATTTTTAGGCCAGGGTTCGTGTTCAGCATATTCTCGAAGTGGAACAACCCTTCAGCCCAGTTTTTCAACTTCTGTTAGAGCTTGGAATGACATTCCAATGGCTTCTTCAGACCATCATCACAGGTCCCAAACACTTCACCAAGCATCGATCTTTCGCAGCAGGTTTCTGCCTGATGAGGGGGTGGTTAGGTTCGGTAATATTTCTGATAAAATTCAAGGTGAAGAAGAAAACAATGGAGTTGCTCCAAACAAGCCTTCTTCGGCTTCTCCTAGTTCACACCATTCACCCCAAAAAGCAGAACATAGCAATGGTTAA 921 0.4473 MKSTVGEINEVEGGHFVRSTGRKDRHSKVHTSKGPRDRRVRLAAHTAIEFYDVQDRLGYDRPSKAMDWLIKKAKPSIDKLVEAQSAGSSNSSASVQFPPHFDTDHITFFPTIFKASSTNNSTQDFGLSLNSFQHHPGLIPWQSQQGGENHAASNEHQTFFAGSTDPVGFRNHYHQRILTWNWNNEATSDHVNKVGFKVNSEQFLGQGSCSAYSRSGTTLQPSFSTSVRAWNDIPMASSDHHHRSQTLHQASIFRSRFLPDEGVVRFGNISDKIQGEEENNGVAPNKPSSASPSSHHSPQKAEHSNG* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3015 306 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 296 IPR005333 GO:0003700
Lja3g3015 306 MobiDBLite consensus disorder prediction 1 36 - -
Lja3g3015 306 MobiDBLite consensus disorder prediction 21 35 - -
Lja3g3015 306 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
Lja3g3015 306 PANTHER TRANSCRIPTION FACTOR TCP4 2 296 - -
Lja3g3015 306 MobiDBLite consensus disorder prediction 281 301 - -
Lja3g3015 306 Pfam TCP family transcription factor 21 94 IPR017887 -
Lja3g3015 306 MobiDBLite consensus disorder prediction 271 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3015 Lja-Chr3 56227703 56229095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3015 5 296 TCP Transcription Factor Family AT3G15030 34.901 1.21e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja3g3015 TCP 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3015 - - lja:Lj0g3v0140319.1 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3015 3 56227703 56229095 Lja3g4860 3 90666637 90669869 ECH
Lja3g3015 3 56227703 56229095 Lja3g3015 3 56227703 56229095 ECH