Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3014 ATGACAAGTCCTTGCACTAAGGTTGGACCTAAGGATATGGGAAAATCCAAGATAAGAAGAAACAATGAAGGTATAAAAAGCAAAGGTTCAAGCTTTTTTATGAAGGTGTTTGGATGTTTCATGACTTTGTGGTCCAAACCTGAAGACGCCTCGAGTAGCAACAACAAACAAGATGATTCTCTACCTTCTTCTGTCACTCTTCTTACAGGGAAGAAACTTGCAAGTGACAATGCTAGAAACCAAGTAGTTGCTCCGGGATCTTTAAGCAAGGAATTGAAAGTTTATCCCCATCTAAAGAAATACACCTTTCAGAACCTAAAGTTGGCAACATGGGATTTTCGATTTCGCCTCGGTGAAGGGATCCTGGGTTCTGTTTACAAAGGTTGGGTCAGTCGCACTGGGACCTCCCCCTCAAGACCTACCGCTGGCCTCCCAGTTGCAGTCAAGATTCTTAACAAAAATGGATCACAAGGCCATCATGAATTTGTTACCGAAGTAATTAACCGTCTTGGTGGTGGTTTAGATCATCCACATTTTGTTAAGTTGATTGGTTATTGCACTGAAGGGGTACTGGTTTATGAGTTTATATCTAAATTTAAAGGAAGCTTAGATAATCATCTCTTTAAGAGACTATACTTTCCCCTTCAGTGGTCAGTTAGAATGAAAATCATGCTTGGTGCTGCTAAGGGCCTTGCATATCTCCATGATGAAGCTGAGAAACCTTTGATATATAGAGAGTTCAAAACTTCCAACATACTATTAGATAGGGACTACAATGCGAAACTTTCTGATTCAGCGCTTGCACGAGATGGTCCTGTGGGAGACTCTACTGATGTCTCAACTCGGGTATTGGGAACACAAGGGTATGCGGCCCCAGAGTATATCATGACAGGCCACCCTACTGCCAAGAGTGATGTGTATAGCTTCGGGGTGGTTTTGCTTGAGATGTTGACAGGAAGAAGATCCATTGACAAAAGAAGGCGTCGAGATGAGGTTAACTTGGTAGAATGGGCGCGGCCTAAACTCAGGTTGGGGGGAGCAGGGTTCCATCAAATGATGGACCCTCAACTTAAAGGTATGTACTCAGGAAGAGGTGCTCGAAGGGCAATGGAGTTGGCTTATCGTTGCATTAGCCGTGAAGCGAAAGACAGGCCTTTGATGAGTGAAGTGGTGGGAGTGCTTATCTCTTTGCCTCGTTACAATGAGAACATAGCTTCTTCCTCTCCACCATCCCTACCCTCACCTTTATTTGAGGGATTGATTGTTGCCTCCTCCAACCATGATGGCTTCATAGTTGGCACATCAGGAAAGGGACCGAGTCGCTTTCGAGCCCCCCCCCCGTGCAATCTTCCTCTTCGTTCACCTAAAGCTAGTGGTGGAATGCCATGA 1389 0.4471 MTSPCTKVGPKDMGKSKIRRNNEGIKSKGSSFFMKVFGCFMTLWSKPEDASSSNNKQDDSLPSSVTLLTGKKLASDNARNQVVAPGSLSKELKVYPHLKKYTFQNLKLATWDFRFRLGEGILGSVYKGWVSRTGTSPSRPTAGLPVAVKILNKNGSQGHHEFVTEVINRLGGGLDHPHFVKLIGYCTEGVLVYEFISKFKGSLDNHLFKRLYFPLQWSVRMKIMLGAAKGLAYLHDEAEKPLIYREFKTSNILLDRDYNAKLSDSALARDGPVGDSTDVSTRVLGTQGYAAPEYIMTGHPTAKSDVYSFGVVLLEMLTGRRSIDKRRRRDEVNLVEWARPKLRLGGAGFHQMMDPQLKGMYSGRGARRAMELAYRCISREAKDRPLMSEVVGVLISLPRYNENIASSSPPSLPSPLFEGLIVASSNHDGFIVGTSGKGPSRFRAPPPCNLPLRSPKASGGMP* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3014 462 MobiDBLite consensus disorder prediction 1 23 - -
Lja3g3014 462 Pfam Protein tyrosine and serine/threonine kinase 116 332 IPR001245 GO:0004672|GO:0006468
Lja3g3014 462 PANTHER OS01G0588500 PROTEIN-RELATED 70 414 - -
Lja3g3014 462 MobiDBLite consensus disorder prediction 436 462 - -
Lja3g3014 462 Gene3D Transferase(Phosphotransferase) domain 1 199 408 - -
Lja3g3014 462 SUPERFAMILY Protein kinase-like (PK-like) 100 420 IPR011009 -
Lja3g3014 462 PANTHER TYROSINE KINASE FAMILY PROTEIN 70 414 - -
Lja3g3014 462 ProSiteProfiles Protein kinase domain profile. 111 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3014 462 Gene3D Phosphorylase Kinase; domain 1 94 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3014 Lja-Chr3 56217156 56220440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3014 34 402 Glycoside Hydrolase AT3G07070 43.077 5.12e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja3g3014 PK_Tyr_Ser-Thr 1.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3014 - - jre:109002600 380.563