Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3002 ATGGCGGAAATTAATGAAGAGTCTCGTGTGAACTTGTCTAATTCTGGAGGCATGAATGAGTCTGAGGATCCGGATGATATCTCAGGTAATTCTGGTGGAGATGATGTGGTCATTAATGAGGAGGACCAGCAACAGTGCAAATTAATTCCCGAGTTGAGCATTGATGAAATTAGGGAGCTGGAGTTTTTGTCTGAGCAGGATGCCATTGAGTTTTACCAGCACTATGCCCAGTTTAAAGGTTTTGGGGTTAGGAAGGATGATGTTCGGCGCGATGCAAAGGGTAATGTTATTAGTCGCCAGCTTGTTTGTAATAGGGAGGGTGAGAGACATGAGAAGCATTTGAAAAAGGTTAGTCGAGTGAAAGAGGCTAAGCCAATTACCAGAGTATCATGCCAAGCTAAATTTCATGTACGTTTCGAGGCAAAGTCTAAGAAGTGGATGGTTTCTTATTTTGAACCTGAGCACAATCATGATTTGACACTGGCTCAGCAAGTTCATTTAATCCCGACATTCAGGGAATTGACTAATGGTGACAAGGCTCAAGTTGACACACTAAAGTTGTATGGCGTGAGGAGTTGCAACATAATGGGTCTCATGATGGGACAAAAAGGAGGTCATGATTCAGTTGGTTTTTTGAAAAAGGACTTGTACAGCCATGTTGATAAGAATAAAAGGATAAGTTTAGGTGCTGGTGATGCTGCTGGTTCATTAAACTATTTTACGCGGAAAGGGGAGAAGGATTCTATGTTCTATTTCAGAGGTGCCATTTCTGCTGCATGCAATTTTCTTAGTGAATACGCCGCTGATGATGCTTCAGATTTTTCAGCCGTAATTGAGGATATATACAAACTTTGGTATCGAAAGTTCAGAAACGTCGTCATCCGAAATCTACTGAAGGCAATTTATTTGTGA 912 0.4134 MAEINEESRVNLSNSGGMNESEDPDDISGNSGGDDVVINEEDQQQCKLIPELSIDEIRELEFLSEQDAIEFYQHYAQFKGFGVRKDDVRRDAKGNVISRQLVCNREGERHEKHLKKVSRVKEAKPITRVSCQAKFHVRFEAKSKKWMVSYFEPEHNHDLTLAQQVHLIPTFRELTNGDKAQVDTLKLYGVRSCNIMGLMMGQKGGHDSVGFLKKDLYSHVDKNKRISLGAGDAAGSLNYFTRKGEKDSMFYFRGAISAACNFLSEYAADDASDFSAVIEDIYKLWYRKFRNVVIRNLLKAIYL* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3002 303 Pfam FAR1 DNA-binding domain 70 160 IPR004330 -
Lja3g3002 303 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 16 193 - -
Lja3g3002 303 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 16 193 - -
Lja3g3002 303 MobiDBLite consensus disorder prediction 1 36 - -
Lja3g3002 303 MobiDBLite consensus disorder prediction 7 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3002 Lja-Chr3 55794536 55796593 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja3g3002 FAR1 1.2e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3002 - - ccaj:109792835 224.557