Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2998 ATGGAAGCTTTTGATTGGGACTGTGGCATCCTTGGAGATGCTCCTAAGAGAATCAGTGATGGTTTTGAAGTAAACAATGGTGTAAATGGAAGTGGGTATGGTTCACCTCTCTCTCTGGTTTTGGATAGAGAGAGAGGGGAGCTTGTGGAGGCCCCTGCCAAATTGGAACGGAAGGGTGTGTCCAATGAGAGAAGCATTGATGCTTTGAAGAACCATAGCGAGGCAGAGAGAAGGAGGAGAGCGAGGATCAATGCACATCTTGATACTCTTCGCAATGTGATCCCAGGTGCTATGAAGATGGACAAAGCATCATTACTTGGTGAGGTTCTTAGACATTTGAAAGATCTGAAAAGGAATGCAGCACAAGATTGTGAAGGTTTAATGATACCGAAGGACAATGATGAAATCAATGTTGAAGAACAGGAGGGTGGGTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCAGGGTTATTGTCTAATATAAGACAAGAACTAGATTCTCTTCATCTTATGATAATCAAGGCAGATATTGCAACTCTGGGAAGCAGGATGAAGAATGTGCTTGTGATTATTAGCTGCGAAGAACGGAACTTTGAAGATGCTGAGTACCGTCAGTTTCTCGCGGGCTCTGTTCACCAAGCTCTGAGGTCTGTACTCAATAGATTTTGTGTTTCACAGGAGGTCATAGGAACCAAAAAAAGAAGGAGAATTTCTATATTCAGTTCATCATCTTTAGAAGATTTCTTATAA 771 0.4137 MEAFDWDCGILGDAPKRISDGFEVNNGVNGSGYGSPLSLVLDRERGELVEAPAKLERKGVSNERSIDALKNHSEAERRRRARINAHLDTLRNVIPGAMKMDKASLLGEVLRHLKDLKRNAAQDCEGLMIPKDNDEINVEEQEGGLNGFPYSIRASLCCEYKPGLLSNIRQELDSLHLMIIKADIATLGSRMKNVLVIISCEERNFEDAEYRQFLAGSVHQALRSVLNRFCVSQEVIGTKKRRRISIFSSSSLEDFL* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2998 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
Lja3g2998 256 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 256 - -
Lja3g2998 256 SMART finulus 73 122 IPR011598 GO:0046983
Lja3g2998 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 119 IPR036638 GO:0046983
Lja3g2998 256 CDD ACT_UUR-ACR-like 155 226 - -
Lja3g2998 256 Pfam Helix-loop-helix DNA-binding domain 71 116 IPR011598 GO:0046983
Lja3g2998 256 Gene3D - 62 124 IPR036638 GO:0046983
Lja3g2998 256 PANTHER TRANSCRIPTION FACTOR BHLH30 14 256 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2998 Lja-Chr3 55743246 55744792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2998 54 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 38.776 3.40e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g2998 HLH 9.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2998 - - gmx:100788819 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2998 3 55743246 55744792 Lja3g2998 3 55743246 55744792 ECH