Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2989 ATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTTGAATCCTCAGACACTATCGATAATGTCAAGGCGAAGATCCAAGACAAAGAGGACACCATTGATAATGTAAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGAGGCTCATCTTCGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCTGACTATAACATCCAGAAGGAGTCTACCCTGCACTTGGTGCTGCGATTGAGAGGTGGCATGCAGATTTTTGTCAAGACCCTGACAGGAAAGACCATTACTTTGGAGGTTGAGAGTTCAGACACGATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCTGGCAAGCAGTTGGAGGATGGACGTACTCTGGCTGATTATAATATTCAGAAGGAGTCCACCCTGCATCTTGTCCTGCGCCTTCGTGGTGGCTTCTGA 504 0.4802 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2989 167 SUPERFAMILY Ubiquitin-like 1 35 IPR029071 -
Lja3g2989 167 Gene3D - 91 167 - -
Lja3g2989 167 Gene3D - 35 90 - -
Lja3g2989 167 ProSiteProfiles Ubiquitin domain profile. 1 90 IPR000626 GO:0005515
Lja3g2989 167 PRINTS Ubiquitin signature 143 164 IPR019956 -
Lja3g2989 167 PRINTS Ubiquitin signature 101 121 IPR019956 -
Lja3g2989 167 PRINTS Ubiquitin signature 122 142 IPR019956 -
Lja3g2989 167 CDD Ubl_ubiquitin 91 166 - -
Lja3g2989 167 Gene3D - 1 34 - -
Lja3g2989 167 PANTHER - 1 34 - -
Lja3g2989 167 SUPERFAMILY Ubiquitin-like 90 166 IPR029071 -
Lja3g2989 167 Coils Coil 23 50 - -
Lja3g2989 167 ProSiteProfiles Ubiquitin domain profile. 91 166 IPR000626 GO:0005515
Lja3g2989 167 SUPERFAMILY Ubiquitin-like 34 90 IPR029071 -
Lja3g2989 167 PANTHER - 35 166 - -
Lja3g2989 167 ProSitePatterns Ubiquitin domain signature. 117 142 IPR019954 -
Lja3g2989 167 CDD Ubl_ubiquitin 1 90 - -
Lja3g2989 167 ProSitePatterns Ubiquitin domain signature. 41 66 IPR019954 -
Lja3g2989 167 PANTHER UBIQUITIN 1 34 - -
Lja3g2989 167 PANTHER UBIQUITIN 35 166 - -
Lja3g2989 167 Pfam Ubiquitin family 33 88 IPR000626 GO:0005515
Lja3g2989 167 Pfam Ubiquitin family 93 164 IPR000626 GO:0005515
Lja3g2989 167 SMART ubq_7 91 162 IPR000626 GO:0005515
Lja3g2989 167 SMART ubq_7 1 86 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2989 Lja-Chr3 55414076 55415221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2989 1 91 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 83.516 1.05e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2989 - K04551 shr:100933931 300.056