Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2978 ATGGTCTCCGCCGACGGAGCTCCGTCGCGTCCTCCGCCGTCGTTCCCCAGCCGCGAGGACTGCTGGAGCGAGGACGCCACCTTCACGCTCGTCGATGCCTGGGGCGAACGCTACCTCGAGCTCAACAGTGGCAGCCTCCGCCAGAAGCACTGGCAGGAGGTCGCCGACACCGTCAACGACCGCCACGCCGGCAGTAAGAAATCCCGCCGGACCGACGTGCAGTGCAAGAACCGAATCGACACGCTGAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCCGAATCCGGCGGCGGTTACCGGAGCCTCTGGCCGTTCTTCTCCCGTCTCAACGCCCTCATCGGCGATACTTATCCGGCCAGAAAGGCATCCCCGCCGGCCGCCGTGAAACCGTCGGCGCCGCCGGCGTGGATTGTCTCGCACCCTGTCGGTCCCCGATCCGGGACTCAGAAACGCCCGGCTGCGAAGCCTTCGCCGCCGGTTCTGAGCAGGGAGGAGGACTCGTTGTTCCGCCGGAATTTCTCGGCGTTCGCGGCGGCTGCGGCTGCTGCGGCGGAGGCGGAGAGCGGGGAGTCGGAGGAGTGGAGGTCGAGCAGCGGCGGCAGTGGGAAGAGGGGAAGAGTGGAGAATGATGACAAGGATTTGCAGTTTGGTTACAGAGAGCTTGCTCATGCTATAGTGAGGTTTGGGGATATGTATGAGAGAGTTGAAGAGATGAAACAGAGGCAAATGGTGGAGTTGGAGAAGCAGAGGATGCAGTTTGCTAAGGATTTGGAATATCAGAGGATGCAGCTTTTCATGGAAACACAGGTTCAGCTGCAAAAAATTAAACGCAGCAAACGATCTTCTTCTGGAACTGATAGTTTCTCATAG 873 0.5956 MVSADGAPSRPPPSFPSREDCWSEDATFTLVDAWGERYLELNSGSLRQKHWQEVADTVNDRHAGSKKSRRTDVQCKNRIDTLKKKYKIEKARVSESGGGYRSLWPFFSRLNALIGDTYPARKASPPAAVKPSAPPAWIVSHPVGPRSGTQKRPAAKPSPPVLSREEDSLFRRNFSAFAAAAAAAAEAESGESEEWRSSSGGSGKRGRVENDDKDLQFGYRELAHAIVRFGDMYERVEEMKQRQMVELEKQRMQFAKDLEYQRMQLFMETQVQLQKIKRSKRSSSGTDSFS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2978 290 MobiDBLite consensus disorder prediction 122 165 - -
Lja3g2978 290 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 11 284 - -
Lja3g2978 290 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g2978 290 Gene3D - 22 88 - -
Lja3g2978 290 Coils Coil 233 253 - -
Lja3g2978 290 Pfam Myb/SANT-like DNA-binding domain 19 113 IPR044822 -
Lja3g2978 290 MobiDBLite consensus disorder prediction 188 210 - -
Lja3g2978 290 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 11 284 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2978 Lja-Chr3 54767062 54770631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2978 207 278 Trihelix Transcription Factor Family AT3G14180 44.872 1.94e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja3g2978 Myb_DNA-bind_4 1.5e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2978 - - lang:109355153 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2978 3 54767062 54770631 Lja3g2978 3 54767062 54770631 ECH