Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2976 ATGGGAAGAAGAAACAGTGGAAGGTCACTGCAAGATATCCTTTGTCGCCGATTGGAGTCCTGCAAATCCAGGTACTCCACAACCGGCGAAATTGTGGACCATCTTCGCTCAATGTACCCTGATTACCAGCGAACCAAGCGCCAAACTCTTGTTCGATTTGTTCAGGATGCTCTTCAATCAAGCAGAAAGCCTAATAATACTCCCACAAAGAAGCTTGATTGGGATGAGGATGATGAGGATGAAGGTCGAAGTGCTTCTCAAAAGAGGCGGAAAAAAATTGATGAAGGTGAAGAGAGATTGCAAAGGATGGAAGCTTTGCACATCAGAAGGATGATGGAGAGCAATGAGGTCCCATCAACATCCTCTGGTTCAGCTTCAGAGAGCGACGAAGATGGGTCTGGATCGGTTTCAACATCAGAAGACGCAATTTATGAGGAGAAAGTGGAACCTGCTTTTGACTTGATGAAGACTATGCTGCGGGATTCATATTCTGGATCAAAGCCTGTGGTGGAGGAAAAGAACGTTGAAATGGACATGGGCAACAATAGTAAGGCCACTTGTGCTGTGAATGAGGGTGTAGGTGGAAGCAAAGGTGAAGCCAAGTCGACGAGGAAGCCATTGAAGGGTTCAGTCTCAAATGGTGGTGGAGATGTTCAGGTGAAGGGGAAGGAGGGGCTTAGGTTTAGGGATTTGGGTGGGATGAAGGAGGTTTTGGAGGAACTGAAGATGGAGGTGATTGTCCCATTGTACCATCCTCAGTTGCTTAGGCGGTTAGGAGTGAGGCCAATGACTGGTATTTTATTGCATGGACCTCCTGGCTGTGGCAAGACTAGGCTGGCTCATGCTATAGCTAATGAGACTGGCCGTCCGTTCTATCACATTTCAGCTCCTGAGGTGGTTTCTGGGGTCTCAGGTGCATCCGAAGAAAATATTAGGGATCTTTTCTCTAAAGCATACAGGACTGCTCCATCAATTGTCTTTATTGATGAAATTGATGCAATTGCTGCAAAACGAGAGAACTTGAATCGTGAAATGGAGAAACGAATTGTGACACAGTTACTTACTTGCATGGATCAATCAAACAGGATTTTGCAACCAACTGATGATTCAAAGAGTTTGGATGACCCCCCTGGCTATGTTCTTGTAATTGGAGCTACAAATAGGCCTGACGCTGTTGACCCTGCCTTGAGAAGGCCTGGTCGGTTTGATCGTGAGATTATGGTTGGCATTCCCGATGAAGCTGCTAGGGAGGAGATACTTTCTGTTCTCACTCGTGGTATGCTGCTTGAGGGCTTCTTTGATCTACGAAAAATAGCCAGATCTACACCAGGATTTGTTGGTTCTGATTTGGAGGCTCTGGCTAACCAGGCCGGTAATTTGGCAATGAAAAGAATATTTGAAGAAAGGAAACGTGAATTTTCTCAAGATCTCACAAGTGAACAGAGTGAAGAATGGTTGATGAAACCATGGTCAACTGAAGAAATTGATAAGTGTGCCGTCAAAATGTCTGATTTTGAGAAAGCAATGAAAATGGTGCAACCTTCATCAAGAAGAGAAGGGTTCTCTTCCATTCCTAATGTAAAATGGGAAGACGTTGGTGGCCTTGATCTTCTAAGACGGGAGTTTGATCGTTATATTGTAAGGCGTATTAAATATCCTGAGGATTATGAGGGACTAGGATTGGATCTTGAGACAGGATTTTTGCTTTATGGGCCTCCAGGTTGTGGTAAAACACTGATTGCCAAAGCTGTCGCCAATGAGGCAGGAGCTAATTTTATTCACATTAAGGGGCCTGAACTTCTAAATAAATATGTTGGAGAAAGTGAGCTTGCGGTTCGGACATTGTTTAGTCGTGCAAGGACATGTGCACCTTGTATAATCTTTTTTGATGAGGTGGATGCTTTGACAACCAAACGTGGCAAAGAAGGTGGATGGGTCATTGAACGACTATTGAACCAGTTGCTTATCGAGTTAGATGGCGCAGAGCAACGGAGAGGTGTTTTTGTGATTGGTGCAACAAATAGGCCTGAGGTAATGGATCGTGCTGTCCTAAGGCCTGGCAGGTTTGGTAAACTTCTTTATGTTCCTCTTCCAAGCCCGAATGAGCGAGTCATGATATTAAAAACTCTTGCAAGGAAGAAAACTATTGATGCCAGTGTGGATTTAAATGCCATAGGAAGATTGGAAGCTTGTAAAAACCTGAGTGGCGCTGATCTTGCTGACTTGATGAACAAAGCAGCAATGGCTGCTCTTGAAGAGAAGTGGACCTCAACTGAGACAACTTCTGGTCCATTGACCATCAAAACAAGTCATTTTGAAATAGCATTGAGTGAAGTCTCTCCCTCTGTATCAGTCATGCAACAGCAGTTCTATCAGAAATTGTCAGAGAGCTTTAAAGCAGCATGA 2406 0.4435 MGRRNSGRSLQDILCRRLESCKSRYSTTGEIVDHLRSMYPDYQRTKRQTLVRFVQDALQSSRKPNNTPTKKLDWDEDDEDEGRSASQKRRKKIDEGEERLQRMEALHIRRMMESNEVPSTSSGSASESDEDGSGSVSTSEDAIYEEKVEPAFDLMKTMLRDSYSGSKPVVEEKNVEMDMGNNSKATCAVNEGVGGSKGEAKSTRKPLKGSVSNGGGDVQVKGKEGLRFRDLGGMKEVLEELKMEVIVPLYHPQLLRRLGVRPMTGILLHGPPGCGKTRLAHAIANETGRPFYHISAPEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIAAKRENLNREMEKRIVTQLLTCMDQSNRILQPTDDSKSLDDPPGYVLVIGATNRPDAVDPALRRPGRFDREIMVGIPDEAAREEILSVLTRGMLLEGFFDLRKIARSTPGFVGSDLEALANQAGNLAMKRIFEERKREFSQDLTSEQSEEWLMKPWSTEEIDKCAVKMSDFEKAMKMVQPSSRREGFSSIPNVKWEDVGGLDLLRREFDRYIVRRIKYPEDYEGLGLDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCAPCIIFFDEVDALTTKRGKEGGWVIERLLNQLLIELDGAEQRRGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPSPNERVMILKTLARKKTIDASVDLNAIGRLEACKNLSGADLADLMNKAAMAALEEKWTSTETTSGPLTIKTSHFEIALSEVSPSVSVMQQQFYQKLSESFKAA* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2976 801 Gene3D - 698 777 - -
Lja3g2976 801 ProSitePatterns AAA-protein family signature. 380 398 IPR003960 GO:0005524|GO:0016887
Lja3g2976 801 Gene3D - 217 410 IPR027417 -
Lja3g2976 801 MobiDBLite consensus disorder prediction 68 111 - -
Lja3g2976 801 ProSitePatterns AAA-protein family signature. 667 685 IPR003960 GO:0005524|GO:0016887
Lja3g2976 801 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 17 798 - -
Lja3g2976 801 Coils Coil 791 801 - -
Lja3g2976 801 Gene3D - 525 791 IPR027417 -
Lja3g2976 801 MobiDBLite consensus disorder prediction 55 143 - -
Lja3g2976 801 CDD AAA 566 697 - -
Lja3g2976 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 515 IPR027417 -
Lja3g2976 801 CDD AAA 253 409 - -
Lja3g2976 801 MobiDBLite consensus disorder prediction 114 140 - -
Lja3g2976 801 Pfam AAA+ lid domain 433 468 IPR041569 -
Lja3g2976 801 Pfam AAA+ lid domain 719 773 IPR041569 -
Lja3g2976 801 SMART AAA_5 563 699 IPR003593 -
Lja3g2976 801 SMART AAA_5 262 412 IPR003593 -
Lja3g2976 801 Pfam ATPase family associated with various cellular activities (AAA) 568 696 IPR003959 GO:0005524|GO:0016887
Lja3g2976 801 Pfam ATPase family associated with various cellular activities (AAA) 266 408 IPR003959 GO:0005524|GO:0016887
Lja3g2976 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 525 798 IPR027417 -
Lja3g2976 801 MobiDBLite consensus disorder prediction 186 218 - -
Lja3g2976 801 Gene3D - 411 519 - -
Lja3g2976 801 PANTHER AAA-FAMILY ATPASE 17 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2976 Lja-Chr3 54709009 54713993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2976 225 799 Calmodulin-binding Proteins AT3G56690 37.224 7.07e-121 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2976 K14571 - gmx:100809594 1164.06