Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2971 ATGGAGGTGACACGAGTAGATGCCGGGCCGGTAGCGCAAAGGCCATCCAATGTGTCATGGTGGCCTTCAGATTTCGTTGAAAAATTTGGATCTGTTTCTTTGGACTCTCAAGATGAGACTTTAAATAATAAAGAATCACCTAGACATTGTAACCAAGATTTCATGACACCTCAGAAGGCATCACAAATTCTCTGGCGCACTGGAATGCTTTCAGAACCAATACCAAATGGCTTTTATTCAGTCGTTCCGGAGAAAAGGCTCAAGAATTTTCTTGATAGTATTCCTACTTTGGACGAGCTTCATGCTTTGGGTGCAGAGGGTTTTAGGGCTGATATCATTGTTGTGGATGCAGAGAAAGATAGAAAGTTATCCATGTTGAAGCAATTAATTGTGGCATTGGTTAAGGGATTGAACTCCAATCCAGCTGCGGTGATTAAGAAGATTGCTGGATTAGTTTCTGATTTTTATAAGCGGCCAAATGCAGAAAGTCCAGCAAAAGCTGCACTTGAGGAATGCTCCCACGTGTTTGAGAATCGTGGTGTCCAGATGCTTGGGCAAATAAAACATGGTTCATGCCGTCCTCGAGCTATCTTATTTAAAGTATTAGCAGATACTGTAGGTCTTGAAAGTAAACTTATGATGGGTTTTCCAAATGATGGGGCTGCTGAATGTGTAGACTCATACAAGCATATGTCTGTTGTAGTTGTGTTAAATTCTGTGGAATTCCTAGTGGATCTTATGCGCTTTCCTGGTCAACTATTACCACAATCAATCAAGTCAATTCTTATGACACACATTTCTGCAGCAGGTGAGAGTGATTCAGCAGAAAATGATTCTTGTGATTCACCATTAGAACCAAACAGTCCTTTATATGGGGTTTCAGAGAGTGCAGAGAAGGAGGATAACCTCCAATTCCATAGAAGATTTGAAGCATCTTCAAATGTTTCAGGAATTCCCTTGCGAAATATGATGTTACGATCAAATTCTACTCTGGACAGGAAATTGAGTTTCTCTCATAGTGAACCCAACATTACAACTGCATTTGGTCGGCGTAGTCGGAGGAAGGTCATTGCTGAACAGAGGACTGCTAGTTCAAGTCCAGAACATCCATCATTTCGAGCGCGTGGACGGTCCATGCTTAGTGGTGACAGGACTGCATTTAGGGATTTCGCCGATGACCAGGCTACTTCAAGATCCAGCTATAAGTCAGATGGTGCATCCTCATCAGAAGCTCGTAGAATACGAAGAAGCATCACCATTACACCAGAAATTGGTGATGATATCGTAAGGGCTGTACGGGCTATGAATGAAAAGCTAAAGCAAAATCGTCTTCTGAGAGAACAAGGGGATGATAGTCCATTGTCCCACTCTCCAAATGATAGAACTAGCACTGCAGATCTTCAGAAAAATGTGTTAAATTTTCATCTTGATGGTCATCGTGAAAGATCCCCCTTATATTCGCTTCATCGTGACAATGCAACTTCTCAGAAGGCAATGTCATTACCCTCTTCACCACATGATTATAGAGGACAAACTTCAGAGAGAAGCGGGCCATCCGAATATGGAATGAATGATGAACTAGAGTCGACTTGGAATAAAGTCCTTGAATCACCAATGTTTAATAATAGACCTCTGTTGCCATATGAAGAGTGGAAGATCGACTTCTCAGAATTGTCTGTTGGAACTCGTATTGGGATCGGGTTCTTCGGAGAAGTTTTCCGTGGCACATGGAATGGCACAGATGTAGCCATCAAGGTTTTCCTGGAGCAAGATTTAACGGCTGAGAACATGGAAGATTTCTGCAATGAGATATCTATTCTCAGCCGACTCCGACATCCTAATGTCATCTTATTTCTTGGTGCATGCACAAAGCCTCCAGGCTTGTCAATGGTGACTGAATACATGGAGATGGGATCCTTGTTTTACTTGATTCATATGAGCGGTCAGAAGAAGAAGCTTAGCTGGCGGAAAAGACTAAAGATGTTACGGGACATAAGCAGGGGCTTGATGCACATACATCGTATGAAGATTATTCACCGCGACGTGAAAAGTGCCAATTGCCTTGTGGATAGGCACTGGACAGTGAAAATCTGTGATTTTGGACTTTCCAGAATTGTAACTGATTCACCCATGAGGGATTCTTCTTCAGCTGGAACCCCAGAATGGATGGCTCCTGAACTGATTCGAAATGAGCCATTCACTGAAAAATGTGATATCTTTAGCCTGGGGGTGATTATGTGGGAGCTCTGCACCTTGAAAAGGCCATGGTTAGGCGTGCCTCCGGAGAGGGTGGTTTATTCCGTTGCTCACGAAGGTTCCAGATTGGAGATTCCTGAAGGCCCACTAGGCCGGCTGATATCAGAATGTTGGGCAGAACCGCATGAGAGGCCAAGTTGTGAGGAGATCCTCTCTCGCTTGGTGGACATCGAGTACTCCATGGACTGA 2445 0.4352 MEVTRVDAGPVAQRPSNVSWWPSDFVEKFGSVSLDSQDETLNNKESPRHCNQDFMTPQKASQILWRTGMLSEPIPNGFYSVVPEKRLKNFLDSIPTLDELHALGAEGFRADIIVVDAEKDRKLSMLKQLIVALVKGLNSNPAAVIKKIAGLVSDFYKRPNAESPAKAALEECSHVFENRGVQMLGQIKHGSCRPRAILFKVLADTVGLESKLMMGFPNDGAAECVDSYKHMSVVVVLNSVEFLVDLMRFPGQLLPQSIKSILMTHISAAGESDSAENDSCDSPLEPNSPLYGVSESAEKEDNLQFHRRFEASSNVSGIPLRNMMLRSNSTLDRKLSFSHSEPNITTAFGRRSRRKVIAEQRTASSSPEHPSFRARGRSMLSGDRTAFRDFADDQATSRSSYKSDGASSSEARRIRRSITITPEIGDDIVRAVRAMNEKLKQNRLLREQGDDSPLSHSPNDRTSTADLQKNVLNFHLDGHRERSPLYSLHRDNATSQKAMSLPSSPHDYRGQTSERSGPSEYGMNDELESTWNKVLESPMFNNRPLLPYEEWKIDFSELSVGTRIGIGFFGEVFRGTWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPGLSMVTEYMEMGSLFYLIHMSGQKKKLSWRKRLKMLRDISRGLMHIHRMKIIHRDVKSANCLVDRHWTVKICDFGLSRIVTDSPMRDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLKRPWLGVPPERVVYSVAHEGSRLEIPEGPLGRLISECWAEPHERPSCEEILSRLVDIEYSMD* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2971 814 Pfam Ethylene-responsive protein kinase Le-CTR1 58 253 - -
Lja3g2971 814 MobiDBLite consensus disorder prediction 441 463 - -
Lja3g2971 814 MobiDBLite consensus disorder prediction 493 523 - -
Lja3g2971 814 ProSiteProfiles Protein kinase domain profile. 558 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2971 814 SMART serkin_6 558 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2971 814 Pfam Protein tyrosine and serine/threonine kinase 559 806 IPR001245 GO:0004672|GO:0006468
Lja3g2971 814 Gene3D Phosphorylase Kinase; domain 1 551 636 - -
Lja3g2971 814 MobiDBLite consensus disorder prediction 350 414 - -
Lja3g2971 814 Gene3D Transferase(Phosphotransferase) domain 1 637 813 - -
Lja3g2971 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 677 689 IPR008271 GO:0004672|GO:0006468
Lja3g2971 814 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 812 - -
Lja3g2971 814 MobiDBLite consensus disorder prediction 392 407 - -
Lja3g2971 814 CDD STKc_MAP3K-like 564 806 - -
Lja3g2971 814 ProSitePatterns Protein kinases ATP-binding region signature. 564 585 IPR017441 GO:0005524
Lja3g2971 814 SUPERFAMILY Protein kinase-like (PK-like) 533 806 IPR011009 -
Lja3g2971 814 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 27 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2971 Lja-Chr3 54598095 54621767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2971 1 813 MAP Kinase Kinase Kinase AT3G58640 70.000 0.0 1169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Lja3g2971 PK_Tyr_Ser-Thr 4.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2971 - - gmx:100807193 1443.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2971 3 54598095 54621767 Lja3g2971 3 54598095 54621767 ECH
Lja3g2971 3 54598095 54621767 Lja3g2971 3 54598095 54621767 PCT