Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2966 ATGTCGGGAGTGGGCCCTCTTTCTCAGGATTGGGAACCCGTCGTCCTCCGTAAGAAAGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGTCGCTCCGGCGCCGATATCGAGACCGTCAAGAAATTTAATGCTGGGACTAACAAAGCTGCCTCTAGCAGCACTTCATTCAACACTAAGAGGCTGGATGACGATACAGAAAGTTTAGCTCATGAGCGTGTCCCAACTGAACTCAAGAAGGCGATAATGCAAGCTAGGATGGACAAGAAACTTACTCAGGCTCAGCTTGCTCAAATAATCAATGAGAAGCCTCAAGTGATCCAAGAGTATGAGTCAGGGAAGGCAATTCCAAACCAGCAGGTTATTGGCAAGTTGGAGAGAGCCCTTGGAGCTAAACTGCGTGGCAATAAATAA 429 0.5058 MSGVGPLSQDWEPVVLRKKAPTAAAKKDEKAVNAARRSGADIETVKKFNAGTNKAASSSTSFNTKRLDDDTESLAHERVPTELKKAIMQARMDKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQVIGKLERALGAKLRGNK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2966 142 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1A 1 142 - -
Lja3g2966 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Lja3g2966 142 Gene3D - 71 142 IPR010982 GO:0003677
Lja3g2966 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Lja3g2966 142 CDD HTH_XRE 85 135 IPR001387 -
Lja3g2966 142 SMART mbf_short4 86 141 IPR001387 -
Lja3g2966 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Lja3g2966 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Lja3g2966 142 MobiDBLite consensus disorder prediction 49 76 - -
Lja3g2966 142 MobiDBLite consensus disorder prediction 50 64 - -
Lja3g2966 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2966 Lja-Chr3 54367645 54371217 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Lja3g2966 MBF1 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2966 K03627 - gmx:100500420 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2966 3 54367645 54371217 Lja3g2966 3 54367645 54371217 ECH
Lja3g2966 3 54367645 54371217 Lja3g2966 3 54367645 54371217 PCT