Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2961 ATGGCCTCCGTGCCCTTGGGGCACCACCACTACCAGGCGCCACCACCGGCCGCGCCTCCGCAACCGTCACAACCGCTGCAGTTTCAGGCTCAAGCTGAAGTGCCTCGCCGGAGCTCCGATATGGAGACTGATAAGTTGCAGGCAATGTCAACTACTGTCATTGAAGGGAATGATGCAGTCACTGGCCACATTATCTCCACCACAATTGGAGGCAAAAATGGTGAACCTAAACAGACCATTAGTTATATGGCAGAGCGTGTTGTTGGCACTGGATCTTTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACTGGAGAGGCAGTAGCAATAAAAAAGGTCTTGCAAGATAGGCGGTACAAAAATCGTGAGCTCCAATTAATGCGCTTGATGGATCACCCAAATGTAATTTCCTTGAAGCATTGTTTCTTCTCCACAACAAGCAGAGATGAACTTTTTTTGAACTTGGTAATGGATTATGTCCCTGAGACATTGTACCGAGTTCTAAAGCACTACAATTCTATGAATCAGAGAATGCCTCTCATCTATGTGAAATTATATACATATCAAATCTTTCGGGGATTAGCATATATCCATACCGTGCCAGGAGTTTCCCATAGGGATGTGAAACCTCAGAATCTTTTGGTTCATCCTCTTACTCATCAAGTTAAGCTTTGTGATTTCGGGAGTGCCAAAGTTCTGGTCAAGGGTGAATCAAACATCGCATACATCTGTTCACGTTACTATCGGGCTCCAGAACTAATATTTGGTGCAACAGAATACACAACTTCTATCGATATCTGGTCAGCTGGTTGTGTCCTTGCCGAACTTCTTCTAGGCCAGCCATTATTTCCAGGAGAAAATCAGGTTGACCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGCTGCATGAACCCGAATTATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTACAATATTCACCTAGTCTTCGCTGCACTGCGCTGGAAGCATTGACACATCCTTTCTTTGATGAGCTTCGTGAGCCAAATGCCCGACTGCCAAATGGCCGCCCATTGCCCCCACTTTTTGACTTTAAACAGGAATTAGCTGGAGCATCATCTGAGCTGGTAAATAGGCTCATCCCAGAGCACATTAGGCGGCAGGCTGGTATCGGCTTCCCTCATCCGGCCGGTACATAG 1269 0.4594 MASVPLGHHHYQAPPPAAPPQPSQPLQFQAQAEVPRRSSDMETDKLQAMSTTVIEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMDYVPETLYRVLKHYNSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVSHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNIAYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEALTHPFFDELREPNARLPNGRPLPPLFDFKQELAGASSELVNRLIPEHIRRQAGIGFPHPAGT* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2961 422 ProSiteProfiles Protein kinase domain profile. 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2961 422 Gene3D Phosphorylase Kinase; domain 1 67 161 - -
Lja3g2961 422 CDD STKc_GSK3 77 369 IPR039192 -
Lja3g2961 422 ProSitePatterns Protein kinases ATP-binding region signature. 88 112 IPR017441 GO:0005524
Lja3g2961 422 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 35 414 - -
Lja3g2961 422 MobiDBLite consensus disorder prediction 1 45 - -
Lja3g2961 422 PANTHER OS02G0236200 PROTEIN 35 414 - -
Lja3g2961 422 SUPERFAMILY Protein kinase-like (PK-like) 81 389 IPR011009 -
Lja3g2961 422 Pfam Protein kinase domain 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2961 422 SMART serkin_6 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2961 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Lja3g2961 422 Gene3D Transferase(Phosphotransferase) domain 1 162 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2961 Lja-Chr3 54193080 54198082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2961 86 377 MAP Kinase Gene Family AT3G59790 35.831 5.97e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lja3g2961 Pkinase 1.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2961 K14502 - gmx:100810924 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2961 3 54193080 54198082 Lja3g2961 3 54193080 54198082 PCT