LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g2959	ATGATGTCAAGATCGTATACAAACCTTTTAGATTTGGCTTCTGGGAATTTCCCGGCCATGGGGCGGGAGTCAAAGGAAAGAAGGCGGATGCCGAGGGTTATGAGTGTCCCTGGGATAGTCTCAGAGCTGGATGATGATCAGGCTGTTAGTGTTTCTTCTGATAATCCGTCAACTATTTCTTCTGATCGAATGATCATTGTAGCAAACCAGCTGCCTCTGAAAGCAAAGCGGAAAGAGGACAACAAAGGGTGGAGTTTCAGTTGGAATGAGGATTCCTTGCTTTTACAGCTTAAGGATGGTTTACCAGAAGATATGGAGATCCTTTATGTTGGGTCTTTACGTGTTGACATTGATCCAGCTGAACAGGATGACGTTTCACAGTATTTGTTGGACAAGTTCAAATGTGTCCCTACTTTTCTACCCCCTGATGTGTTGGATAAATTCTATGATGGCTTCTGTAAGAGGCAGTTATGGCCACTTTTCCATTACATGTTACCATTTTCTACAGATAAAAGCCATCGTTTTGATCGTACTTTGTGGGAAGCCTATGTTCTGGCAAATAAGCTTTTTTTTCAAAAGGTAGTTGAAATAATCAATCCAGAAGATGATTATATTTGGATTCATGATTATCACTTGATGGTGCTGCCGACTTTTATTAGAAGGCGTTTTAACCGGGCTAAGATTGGATTTTTCCTACATAGCCCCTTTCCTTCATCAGAGATATATAGGACTCTTCCTGTCAGGGAAGAGATACTGAAAGCTTTACTGAACTCTGATATCATTGGATTCCATACCTTTGACTATGCTCGCCATTTCCTTTCCTGTTGCAGTCGTATGTTGGGTTTGGAGTATCAGTCAAAGAGGGGTTATCTAGGATTGGAATATTATGGAAGGACTATCAGTATTAAGATTATGCCTGTCGGGATTCACATGGGTCGGATTGAATCAGTTATGAGAATGGCAGATGAGGAGTGTAAGGTAAGGGAGCTTAGACATAAATTCGCAGGAAAAACCATCTTGCTTGGTGTTGACGATATGGACATTTTTAAAGGCATAAATTTGAAGATTTTGGCTATGGAGCAGATGCTCAGACAACACCCCAAATGGCAGGGAAGAGCTGTTCTGGTCCAGATAGTTAATCCTCCAAGGGGTAGAGGGATACACCTAGAGGAGATACACACTGAAATACAAGAAAGCTGCAGCAGGATCAACAGAGTGTTTGGGCGACCTGGTTATGAACCTATTGTTTTTATTGATAGGTCGGTTCCAATTGCTGAAAAAGTTGCCTACTACAGCATTGCTGAGTGTGTTATTGTCACAGCAGTAAGGGATGGGATGAACCTAACTCCTTATGAATATATTGCTTGTAGACAGGGATTATCTAGTTCTGAATCAAGTTCCAATGTCTACGACGCAAAGAAGAGCATGCTGGTAATATCAGAATTTATTGGGTGTTCTCCGTCACTTAGTGGGGCTATCCGTGTCAATCCATGGAATGTTGAAGCAACTTCCGAGGCAATGAATGAGGCCATCTCAATGGGTGATGCAGAAAAACAGTTACGGCATGAAAAACATTACCGATATGTAAGCACTCATGATGTGGCATACTGGTCACGTAGTTTCTTGCAAGACATGGAGAGGGCTTGCACAGACCTTCTTAAGAAAAGATGTTGGGGAATAGGTCTTAGTTTTGGATTTAGAGTTGTGGCACTTGACCCTAATTTTAAAAAGCTCTCAATTGATTCTATGGTTTCAGCTTACAAGAGAGCAACAAGCAGGGCCATTTTGTTGGACTATGATGGTACTGTGATGCCACAGAACTCCATTAATAAGAGTCCAAGCACGGAAGTCATCTCTATTTTAGAATCACTTTGTGCAGACCCCAAAAATGTAGTTTTCATTGTTAGTGGACGGGGAAGGGATAGCTTAAGCGACTGGTTTATCCCCTGCAAAAAACTTGGAATTGCTGCAGAACATGGGTACTTCTTGAGATGGTCCGAGAGTGAAGAATGGGAAATTTTAGGTAAGTGCACTGAATTTGGATGGATGCAGATTGCGCAACCTGTAATGAAACTATATACAGAGGCAACCGATGGTTCCAGCATTGAACGGAAGGAAAGTGCTTTGGTCTGGCAATACCGGGATGCAGACCTTGGTTTTGGATCTGCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTTTGGCCAATGAGCCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTTGAAGTGAAGCCTCAGGATGTGAGCAAAGGCTTAGTTGCTGAAAAGATATTCTCATCAATGGCTGGGAATGGCAAACCAGCTGACTTTGTGCTTTGTGTTGGTGATGACAGATCAGATGAGGACATGTTTGAAATAGTTAGGAGTGCAATCTCAAGAAATATTCTTTCCCCCAATGCTTCTGTATTTGCTTGCACGGTTGGACAAAAACCAAGCAAAGCAAAGTATTATCTGGATGATACCTTTGAAGTAATAAACATGCTAGAATCTTTGGCGGAAGAATCAGATTCTTCTCCTTACATAGAAGAAACTGGGGATTCCTCTTGA	2574	0.4188	MMSRSYTNLLDLASGNFPAMGRESKERRRMPRVMSVPGIVSELDDDQAVSVSSDNPSTISSDRMIIVANQLPLKAKRKEDNKGWSFSWNEDSLLLQLKDGLPEDMEILYVGSLRVDIDPAEQDDVSQYLLDKFKCVPTFLPPDVLDKFYDGFCKRQLWPLFHYMLPFSTDKSHRFDRTLWEAYVLANKLFFQKVVEIINPEDDYIWIHDYHLMVLPTFIRRRFNRAKIGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMRMADEECKVRELRHKFAGKTILLGVDDMDIFKGINLKILAMEQMLRQHPKWQGRAVLVQIVNPPRGRGIHLEEIHTEIQESCSRINRVFGRPGYEPIVFIDRSVPIAEKVAYYSIAECVIVTAVRDGMNLTPYEYIACRQGLSSSESSSNVYDAKKSMLVISEFIGCSPSLSGAIRVNPWNVEATSEAMNEAISMGDAEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACTDLLKKRCWGIGLSFGFRVVALDPNFKKLSIDSMVSAYKRATSRAILLDYDGTVMPQNSINKSPSTEVISILESLCADPKNVVFIVSGRGRDSLSDWFIPCKKLGIAAEHGYFLRWSESEEWEILGKCTEFGWMQIAQPVMKLYTEATDGSSIERKESALVWQYRDADLGFGSAQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAEKIFSSMAGNGKPADFVLCVGDDRSDEDMFEIVRSAISRNILSPNASVFACTVGQKPSKAKYYLDDTFEVINMLESLAEESDSSPYIEETGDSS*	858

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g2959	857	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED	1	854	-	-
	Lja3g2959	857	Gene3D	Glycogen Phosphorylase B;	56	316	-	-
	Lja3g2959	857	SUPERFAMILY	HAD-like	593	841	IPR036412	-
	Lja3g2959	857	TIGRFAM	T6PP: trehalose-phosphatase	592	841	IPR003337	GO:0003824\|GO:0005992
	Lja3g2959	857	Gene3D	Glycogen Phosphorylase B;	317	530	-	-
	Lja3g2959	857	CDD	GT20_TPS	63	546	IPR001830	GO:0003824\|GO:0005992
	Lja3g2959	857	Pfam	Glycosyltransferase family 20	63	546	IPR001830	GO:0003824\|GO:0005992
	Lja3g2959	857	CDD	HAD_TPP	594	835	-	-
	Lja3g2959	857	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	63	550	-	-
	Lja3g2959	857	Gene3D	-	592	690	IPR023214	-
	Lja3g2959	857	Gene3D	-	721	851	IPR023214	-
	Lja3g2959	857	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	854	IPR001830	GO:0003824\|GO:0005992
	Lja3g2959	857	Pfam	Trehalose-phosphatase	596	829	IPR003337	GO:0003824\|GO:0005992
	Lja3g2959	857	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	595	800	IPR006379	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g2959	Lja-Chr3	54060971	54065858	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g2959	1	849	Trehalose Biosynthesis Gene Families	AT1G06410	78.563	0.0	1384

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g2959	K16055		-	gmx:100811463	1603.96