Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2950 ATGGCTTCAGAGAAGAAACTCGCGAACCCTATGAGGGAGATCAAGGTCCAGAAGCTCGTCCTCAACATCTCCGTCGGTGAGAGTGGTGATCGTCTCACCAGAGCCGCCAAGGTGCTGGAGCAACTTAGTGGCCAAACCCCAGTGTTTTCTAAGGCCAGATACACTGTTCGATCCTTTGGAATCAGAAGAAATGAAAAGATTGCATGCTATGTCACTGTTAGAGGCGACAAGGCAATGCAACTTTTGGAGAGTGGATTGAAGGTGAAAGAATATGAACTTCTTAGAAAGAACTTTAGTGATACTGGGTGCTTTGGCTTTGGTATTCAGGAGCACATTGACTTGGGAATCAAGTATGATCCATCCACTGGAATTTACGGTATGGATTTCTTTGTTGTTTTGGAGCGCCCTGGTTACCGTGTGGGACGTCGCCGTAGGTGCAAGTCCCGTGTTGGGATTCAACACCGTGTCACAAAGGATGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTTAACAAGGCTCAGGCAGTGTTTTAA 546 0.4689 MASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKDDAMKWFQVKYEGVILNKAQAVF* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2950 181 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Lja3g2950 181 Pfam Ribosomal protein L5 9 62 IPR031310 -
Lja3g2950 181 PANTHER 60S RIBOSOMAL PROTEIN L11-1 1 180 - -
Lja3g2950 181 SUPERFAMILY RL5-like 9 173 IPR022803 -
Lja3g2950 181 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 1 180 IPR002132 GO:0003735|GO:0005840|GO:0006412
Lja3g2950 181 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
Lja3g2950 181 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
Lja3g2950 181 Gene3D - 2 177 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2950 Lja-Chr3 53620630 53622932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2950 1 180 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 93.889 2.16e-128 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2950 K02868 - fve:101302044 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2950 3 53620630 53622932 Lja3g2950 3 53620630 53622932 ECH