Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2947 ATGGATTGCAAGGGAATCCAAAGCAGCTCTTCATCTTGGATGATATGGAAGTATGATGTGTTTGTGAGCTTTAGAGGCGAAGACACACGAAATAACTTCACTGATCATCTTTTTGGTGCTCTCCATACAAAAGGCTTTGTTATATTCAGGGATGATAGAGAGCTCAGAAAAGGGGGAAGTATATCCACTGAGCTTCTACAAGCAATTGAAGGATCCCGAATTTTGATTGTGGTCTTCTCAAAAAACTATGCTTCTTCCACATGGTGCTTACAAGAACTGGCGAAGATTGCCGATAACGTTGAAGTATCGCAAACTGTTCTGCCTATTTTCTATGATGTGAGTCCATCTGAGGTGAGAAAACAAACTGGGAATTATGGAAAAGCCTTTGTGGAGCATGAAGAAAGATTCCGAGATAATTTAGAGATGGTTCAAACATGGAGGGATGCTCTAACACGAGTAGCCAATCTCTCTGGATGGGATGTAAGCGATAAGCCACAATATGGAGAGATTGAAAAAATTATTAAGGAGGTAACACGCCTATTGGATCGCAAACTTTCAACTCCCTCCGATGATATAGTTGGGATGCAGTCACGAGTGGAAGAATTAGAAAAGCTTTTGGTTCTAGACTCAAATGATGATATTCGAGTTGTAGGGATTTGTGGCATGGGTGGAATAGGGAAGTCAACACTTGTTGCTACTTTATATTGCAGAATCTGTAATCAATTTGATGCATCATGTTTCATTGATGATATAAGTAAACTTTTTGGAGACTATGGTCCAATTGAGGCACAAAAGCAAATTCTTAGTCAAATTTTAAATGGGGAAAGTCTTCAGCTGAACAATCCTGCCATTGCAACTAATTTGATGCGAAATAGGTTACGCCACAAAAAGGTCCTCATAGTTCTTGATAATGTTGATGGAGTACTGCAGCTGGACAAATTGGCTCTAAAACGTGAATGGCTAGGTGCAGGAAGTAGAATCATCATAATTTCAAGGGATGAACATATCTTGCAAGAGTATCAAGTGGATAAAGTTTACAAAGTTCAACTCTTGAATTATCGAGATGCTCTACAATTGTTTTGTAGAAAAGCTTTCAAATGTGATGATATCGTAAGAGATTACCTTGACTTGACAAATGAGGCACTAGAGTATGCTAAAGGCCTCCCATTAGCAATTAAAGTATTGGGTTCATTGTTTTTCGGTCGAGATGTTTCTGAATGGAGAAGTTCATTGGTTAGGCTAAGAGAAAATCCAGAAAAAGATATTATGGATGTGCTTCGAGTTAGTTTTGATGCACTGAAGGATACAGAAAAGGAAATATTTTTAGATATTTCTTGTTTCTTTCATGGACAATCAAGGGAATATGTGGAACATCTTCTAGATATTCGTGGATTTTATCCTAAAATAGGTATAAGAAATCTCGTTGAAAAATCGCTGGTCATAATCCTTGAAGATGAGACTATTACAATGCATGACTTGTTGAAAGAGTTGGGCAGAAGTATTGTTAGAGAGAAGTCACCAAAAGAACCACGAAACTGGAGCAGGCTGTGGGACTACAAGGATCTACACAATGTTATCTTACAAAATATGGCAACTGAAAATCTTGAGGCCATAGTTATAAGAAGACATATACCAGAGTTTCCGGAAACAACCATGAAAGCAGGTGCTTTGTCAAAAATGAGTCACCTTAAGTTGCTCATTCTCCAAGGTGTCATCTTTTCAGGAAGTCTCAATCATCTTTCCAATGAATTACAACACATTTGCTGGGAAAAGTATCCTTTCTGGTGTTTGCCACCAAACTTCGAACCAGATAAACTTGTTGAATTGGTCCTGCATCGAAGTAGCATTAGACAACTATTGAAAGACTCAAAGCCTCTGCACCATTTGAGAGTGATGGATCTTTCTTACTCCAGAAATCTTATTAAAACACCGGATTTTAGGGAGGTACCAAATCTTGAGTCCCTCGAACTTCAAGAATGTATAGAACTTGTGCATATCGATCCTTCCATTGGCATTCTGACAAAGCTTGTTAATTTGAACTTGTCATATTGTACAAATCTAGTCAGTATTCCCAATATTATTTTTCATCTTAGCTCTCTTGAATATCTAAATCTTTCTGGCTGCTCAAAATTATACATTAACCAGTTGTTAGGGAAACCGGGGCATGCCGAACATGTGAAGATACTTGAAATAAATGAAAGTAGTATCAAGAAACAATCAACATCCTCCATCCTGAAAATTGTTAGGTTCCCTCTCCATTGGTTTTATTCTGGAAGGCGTGAAGAATCAATTGGCTTACTGTTGCCATCTGTGCCTCATTTCCTATGCTTGAAAGAGCTTGACCTAAGTTTCTGCAATCTATTTCAAGTCCCTGATGCTATTGGCTGTTTACATTCTTTAATGTGGTTAAACTTGAATGGAAATAATTTTGTTACACTACCTTCTAGCATCAAGGAACTTTCCAAACTTCTAGAGTTGAAGTTGGAACACTGTAAGCTGCTGAAATATTTACCAGAGCTCCCTGTAAGAAGCAAAGCATCTTTCGATCACTATGTAGCAGGATTATATATCTTCAACTGCCCCAATTTGATTGCGATTGAGCGATGTTATAACATGGCTTTTTCATGGATGATACAACTCCTTGAGGTGCACATGCAATCCTCTCTTCGCCATGGTGATATTCACATTGTTATTCCTGGAACTGAAATTCCAAGGTGGTTTAATAAACAAAGTGCTGGTAGTTCAATGAGCATGGATCTTATTCCTCATATGCATGATGAAAATTGCATAGGAATTGCCTGCTGTGCAGCATTGGTGGCACATGTTGAGCCCACTAATTTGGGTTGTACAAGGAAAAATCATGATGGTCCAACTTTTATTCTTGGAGAAGGCTCATTTTGTTTCATTTTTGAAATGAAAAAGGGTAACTTTGTGTACTTTATGCCGATGCTTATAGTAAAAGATCTGTTCACAGTTGAATCAAATCACCTGGTGCTACTATTTTTCAGTCGGGAAGCATTCATTAGCCGTAAAAGTTTTACACCAGCAGGAACACATGATTTCGATAGTGTGAAATTGATTTGCTCAACTCACAAGCCCCAAGGTTTGCATATGGAGGTGAAAAGTTGTGGGTATCATTGGCTATTTAAGGAGGACCTGGTAAAATTAAACCGGAAAATGACGCATAGTGGGAATTCTTCAGTTAGGAAGCACATGCTTTTAACAAATGGATAG 3234 0.3816 MDCKGIQSSSSSWMIWKYDVFVSFRGEDTRNNFTDHLFGALHTKGFVIFRDDRELRKGGSISTELLQAIEGSRILIVVFSKNYASSTWCLQELAKIADNVEVSQTVLPIFYDVSPSEVRKQTGNYGKAFVEHEERFRDNLEMVQTWRDALTRVANLSGWDVSDKPQYGEIEKIIKEVTRLLDRKLSTPSDDIVGMQSRVEELEKLLVLDSNDDIRVVGICGMGGIGKSTLVATLYCRICNQFDASCFIDDISKLFGDYGPIEAQKQILSQILNGESLQLNNPAIATNLMRNRLRHKKVLIVLDNVDGVLQLDKLALKREWLGAGSRIIIISRDEHILQEYQVDKVYKVQLLNYRDALQLFCRKAFKCDDIVRDYLDLTNEALEYAKGLPLAIKVLGSLFFGRDVSEWRSSLVRLRENPEKDIMDVLRVSFDALKDTEKEIFLDISCFFHGQSREYVEHLLDIRGFYPKIGIRNLVEKSLVIILEDETITMHDLLKELGRSIVREKSPKEPRNWSRLWDYKDLHNVILQNMATENLEAIVIRRHIPEFPETTMKAGALSKMSHLKLLILQGVIFSGSLNHLSNELQHICWEKYPFWCLPPNFEPDKLVELVLHRSSIRQLLKDSKPLHHLRVMDLSYSRNLIKTPDFREVPNLESLELQECIELVHIDPSIGILTKLVNLNLSYCTNLVSIPNIIFHLSSLEYLNLSGCSKLYINQLLGKPGHAEHVKILEINESSIKKQSTSSILKIVRFPLHWFYSGRREESIGLLLPSVPHFLCLKELDLSFCNLFQVPDAIGCLHSLMWLNLNGNNFVTLPSSIKELSKLLELKLEHCKLLKYLPELPVRSKASFDHYVAGLYIFNCPNLIAIERCYNMAFSWMIQLLEVHMQSSLRHGDIHIVIPGTEIPRWFNKQSAGSSMSMDLIPHMHDENCIGIACCAALVAHVEPTNLGCTRKNHDGPTFILGEGSFCFIFEMKKGNFVYFMPMLIVKDLFTVESNHLVLLFFSREAFISRKSFTPAGTHDFDSVKLICSTHKPQGLHMEVKSCGYHWLFKEDLVKLNRKMTHSGNSSVRKHMLLTNG* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2947 1077 SMART till_3 17 156 IPR000157 GO:0007165
Lja3g2947 1077 Gene3D - 10 180 IPR035897 -
Lja3g2947 1077 Pfam NB-ARC domain 198 417 IPR002182 GO:0043531
Lja3g2947 1077 Pfam TIR domain 17 177 IPR000157 GO:0007165
Lja3g2947 1077 Gene3D Ribonuclease Inhibitor 527 742 IPR032675 -
Lja3g2947 1077 Gene3D Ribonuclease Inhibitor 751 891 IPR032675 -
Lja3g2947 1077 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Lja3g2947 1077 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Lja3g2947 1077 CDD ABC_ATPase 215 346 - -
Lja3g2947 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 444 IPR027417 -
Lja3g2947 1077 PRINTS Disease resistance protein signature 695 711 - -
Lja3g2947 1077 PRINTS Disease resistance protein signature 292 306 - -
Lja3g2947 1077 PRINTS Disease resistance protein signature 216 231 - -
Lja3g2947 1077 PRINTS Disease resistance protein signature 385 399 - -
Lja3g2947 1077 SUPERFAMILY L domain-like 503 880 - -
Lja3g2947 1077 Gene3D - 181 348 IPR027417 -
Lja3g2947 1077 Pfam C-JID domain 898 1052 IPR045344 -
Lja3g2947 1077 Gene3D - 350 434 IPR042197 -
Lja3g2947 1077 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 186 1058 - -
Lja3g2947 1077 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 186 1058 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2947 Lja-Chr3 53410187 53415686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2947 18 826 WRKY Transcription Factor Family AT4G12020 30.193 1.04e-86 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2947 - - mtr:MTR_4g080777 1276.92