Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2945 ATGGATTGCAAGCAAATCCAAAGCAGCTCTTCATCTCAAACTATATGGAAATATGACGTGTTTCTAAGTTTTAGAGGTGAAGACACTAGAAACAACTTCACTGATCATCTTTTTGGCGCTCTTTATGAAAAATGCTTTGTTATATTCAAGGATGACATAAAGCTCACAAAAGGAGGAGATATATCCACTGAGCTTCTACAAGCAATTGAAGAATCCCAAATTTTGATTGTGGTCTTCTCAAAAAATTATGCTTCTTCCAAATGGTGCTTGCAAGAACTTGCAAAGATTGCTGATTGCATTAACGTACAAGGACAAAAAGTTCTGCCTATTTTCTATGATGTGAATCCATCTGATGTGAGAAGACAAAGTGGAAATTATGAAAAAGCCTTCGTGAAGCATGAAGAAAGATTCAAAGATCATATAGAGATGATTCAAACATGGAGGGAAGCTCTATCACAAGTAGCTAGTCTCTCTGGTTGGGATATCAGCAATAAGGCACAACATGGAGAGATTGGAGAAATTGTTAAAGAAGTAACAAGCATATTGAGTCACAACTTTTCAACTACACCAAATGACACAGTTGGGATGCAGTCACAAGTGGAAGAATTAGAAAATATTTTGGTTTTAGACTCAAATGCTGATGTGAAAGTTGTAGGAATTAGTGGCATGGGTGGAATAGGGAAGTCAACATTGGCCGCTAGTTTATATTGCAGAATCTCTAATCAATTTGATGCATCGTGCTTTATTGATGATATAAGTAAACTTTTTGGCGACCATGGTCAAATTGATGGTCCAATTGAGGCACAAAAGCAAATTCTTAGTCAAACTTTAAATGGGGAAAATCTTCCGTTGTACAATTCTATCAAGACGTCTAATTTTATTCAAACAAGGTTACGCCACAAAAAGGTCCTCATAGTTCTTGATAATGTTGATGAAGCGAAACAGCTGGACAAATTGGCTATCAAACATTGCCTGGGTGGAGGAAGTAGAATCATTATAATTTCTAGGGATGAACATATCTTGCAAGAGTATCAAGTGGATAAAGTTTACACTGTTCAACTCTTGAATTATCGAGATGCTCTTCAATTGTTTTGTAGAAAAGCTTTCAAATGTGATGATACAATGAGGGATTACATTGACTTGACAAATGAGGCACTATCATATGCTAATGGCCTCCCATTAGCAATTAAAGTATTGGGTTCATTTTTGTTTGGCCTAGATGTTTCTGAATGGAGAGGCGCATTGGTTAGGCTGAGAGAAAATCCGAAAAAGGATATAATGGACGTGCTTCGAATTAGCTTTGATGCATTGGAGGATTCAGAAAAGGAAATATTTTTAGATATTTCATGTTTTTTTCATGGAAATTTAAGGGAAAATGTGGAGAATATTCTAGATATTCGTGGCTTTCATCCTAAAATTGGTATAAAAGTTCTCATTGATAAATCACTTGTCACAATTAATGAATCTGAGACTATTGAAATGCATGACTTGTTGATAGAGCTGGGCAGAAGTATAGTTCGAGAAAAATCACCAAAAGGACCAAGAAAGTGGAGCAGACTATGGGACTGCAATGATCTCTACATTGTTTTGCAAGAAAATATGGCAGCAGAAAATCTTGAAGCCATAGGTTGTGAAAGTTCGGTAGAGTTTCCGAGGACAATGAGGGCTGATACTTTCTCAAAAATGATTTGCCTTAAGTTGCTCATACTTAGGACCGTAAGATTGAAATTTTCAGAAAGCCTCAATTGCCTTTCAAGTGAATTACAATACCTTGATTGGGATGATTATCCTTTCCAGTATTTGCCACCAAATTTTGAACCGGATAAACTTGTTGAGTTGTACCTCTGTAGGAGCAGCATTAAACAACTATGGAAAGAGCCAAAGGGTCTACACCATTTGAGATTACTTAATCTTTCTTACTCCAAAAATCTTATTAAATTGCCGAATTTTAGGGAGATACCAAATCTTGAGTTCCTCTCTCTTGAAGGATGTATAAAACTTGTGCAGATCGATCCTTCCATTGGAATTCTGACAAAGCTTGTTTATTTAAACTTGAGATATTGTGAAAACCTAGTCAGTATTCCCAACATCATTTTTGGTCTCAGTTCTCTCAACCAACTACTTCTCTCTGGCTGCTCAAAGTTATTCCAGAACCAGCTATTAAGGGAACCAAGGCATGTAGATCATGTGAAGATACTTGAAATAAATGGAACTGGTATCAAACATCAGCCAACATCCTACATCCTCAAAATTCTAAAGCATGAGGAATCAATTGGTTTATTGTTTCCATCTTTGCCTCATTTCCTATGTTTGGAAGAGCTTGACCTAAGTTTCTGCAATCTACTTCAAATCCCTGATGCTATTGGCTGGTTACATTCTCTAATACGGCTAGATTTGGGGGGAAATAATTTTTTGCACTACCTTCTGCTGGAACACTGTAAGCAGCTGATGTATTTGCCAGAGCTCCCAGTAAGAAGCAAAGCATCTTTCGATGACTATGTAGCAGGATTATATATCTTCAACTGCCCCAATTTGATTGAGTTAGAGCAATGTTATATCATGGCTTTTTCATGGATGATACAACTCCTTGAGGTCATTGTTATTCGCGGAACGGAAATTCCAAGGTGGTTTAGCGAACAAAAAGCGGGTGATTCAGTTAGCATGGGTTTTACTCCCTATATACATGATGAAAATTGCATAGGAGTTGCCTGCTGTGCAATATTGCTGGCACATGATGATCCTACTAATTTGGGTGGTGCATGGTGTGAAGAGGGTTGTGTTTGGTCCACTTTTGAATATGATAAACATAAGAGACACTACTATTTTCCGTTGAATATAACAAAAGATCTGATCACAGTTGAATCAAATCACTTGTTGCTACAATTTTTCACTATGGAAGTATTCATTAATAGTATTATAAGAATTGAAAGATTTTATGAGGACAGTGTGGAATTGTTTATCTCGTCTCAACAACCCCAAGGTTTGCATTTGGAGGTGAAAAATATTCGGTATCATTGGGTATTTGAGGAGGATCTGGTTAAATTCAGCTCGATGATGGGGCACACTGGAAATTCTTCAGTTTGGAGGCCCGACCTTTTAACAAATGGATAG 3111 0.3703 MDCKQIQSSSSSQTIWKYDVFLSFRGEDTRNNFTDHLFGALYEKCFVIFKDDIKLTKGGDISTELLQAIEESQILIVVFSKNYASSKWCLQELAKIADCINVQGQKVLPIFYDVNPSDVRRQSGNYEKAFVKHEERFKDHIEMIQTWREALSQVASLSGWDISNKAQHGEIGEIVKEVTSILSHNFSTTPNDTVGMQSQVEELENILVLDSNADVKVVGISGMGGIGKSTLAASLYCRISNQFDASCFIDDISKLFGDHGQIDGPIEAQKQILSQTLNGENLPLYNSIKTSNFIQTRLRHKKVLIVLDNVDEAKQLDKLAIKHCLGGGSRIIIISRDEHILQEYQVDKVYTVQLLNYRDALQLFCRKAFKCDDTMRDYIDLTNEALSYANGLPLAIKVLGSFLFGLDVSEWRGALVRLRENPKKDIMDVLRISFDALEDSEKEIFLDISCFFHGNLRENVENILDIRGFHPKIGIKVLIDKSLVTINESETIEMHDLLIELGRSIVREKSPKGPRKWSRLWDCNDLYIVLQENMAAENLEAIGCESSVEFPRTMRADTFSKMICLKLLILRTVRLKFSESLNCLSSELQYLDWDDYPFQYLPPNFEPDKLVELYLCRSSIKQLWKEPKGLHHLRLLNLSYSKNLIKLPNFREIPNLEFLSLEGCIKLVQIDPSIGILTKLVYLNLRYCENLVSIPNIIFGLSSLNQLLLSGCSKLFQNQLLREPRHVDHVKILEINGTGIKHQPTSYILKILKHEESIGLLFPSLPHFLCLEELDLSFCNLLQIPDAIGWLHSLIRLDLGGNNFLHYLLLEHCKQLMYLPELPVRSKASFDDYVAGLYIFNCPNLIELEQCYIMAFSWMIQLLEVIVIRGTEIPRWFSEQKAGDSVSMGFTPYIHDENCIGVACCAILLAHDDPTNLGGAWCEEGCVWSTFEYDKHKRHYYFPLNITKDLITVESNHLLLQFFTMEVFINSIIRIERFYEDSVELFISSQQPQGLHLEVKNIRYHWVFEEDLVKFSSMMGHTGNSSVWRPDLLTNG* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2945 1036 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Lja3g2945 1036 Pfam TIR domain 17 186 IPR000157 GO:0007165
Lja3g2945 1036 Gene3D Ribonuclease Inhibitor 548 729 IPR032675 -
Lja3g2945 1036 Gene3D Ribonuclease Inhibitor 730 882 IPR032675 -
Lja3g2945 1036 ProSiteProfiles TIR domain profile. 16 179 IPR000157 GO:0007165
Lja3g2945 1036 Gene3D - 355 438 IPR042197 -
Lja3g2945 1036 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 448 IPR027417 -
Lja3g2945 1036 Pfam NB-ARC domain 197 422 IPR002182 GO:0043531
Lja3g2945 1036 SMART till_3 17 157 IPR000157 GO:0007165
Lja3g2945 1036 SUPERFAMILY L domain-like 494 849 - -
Lja3g2945 1036 Gene3D - 180 350 IPR027417 -
Lja3g2945 1036 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 748 IPR044974 GO:0006952
Lja3g2945 1036 Gene3D - 14 179 IPR035897 -
Lja3g2945 1036 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 748 - -
Lja3g2945 1036 PRINTS Disease resistance protein signature 389 403 - -
Lja3g2945 1036 PRINTS Disease resistance protein signature 297 311 - -
Lja3g2945 1036 PRINTS Disease resistance protein signature 699 715 - -
Lja3g2945 1036 PRINTS Disease resistance protein signature 217 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2945 Lja-Chr3 53341400 53349834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2945 18 797 WRKY Transcription Factor Family AT4G12020 30.947 1.95e-88 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2945 - - mtr:MTR_4g080777 1142.1