Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2937 ATGAGGTTTATGAATTACATTACACAATGGAGAAGTGCCGCGAAGGAAGCATTAGATCGCACTGCAATAACAGTCAAGTTCCTATGCTGGCTTCACTTCACCGATAACTACCTCTTCTCCGCAACTCACGTGTATGGACCTAGCATGCTTCCCACCCTAAACCTCGCCGGCGACGTCGTTCTCACCGAACGCCTCTCTCATCGCGTCGGGAACCTCGCCCATGGTGACTTGGTGCTCGTTAGGTCCCCTGTGAACCCTAATCGGTGCTTGACCAAGCGAATTGTCGCCATGGAAGGGGACACTGTTTCTTACTTTGATCCCTTGCGTGCTGATGCTGCTCAAGTTGCAGTGGTACCAAAGGGACATGTTTGGATTCAAGGGGATAACGTCTATGCCTCCCATGATTCACGTCATTTTGGTCCTGTTCCATATGGTCTTATACAAGGAAAAGTCTTTTTTCGGGTTTGGCCACTTGATAGCTTTGGACTACTAGATCAATGA 501 0.489 MRFMNYITQWRSAAKEALDRTAITVKFLCWLHFTDNYLFSATHVYGPSMLPTLNLAGDVVLTERLSHRVGNLAHGDLVLVRSPVNPNRCLTKRIVAMEGDTVSYFDPLRADAAQVAVVPKGHVWIQGDNVYASHDSRHFGPVPYGLIQGKVFFRVWPLDSFGLLDQ* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2937 166 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 5 164 - -
Lja3g2937 166 SUPERFAMILY LexA/Signal peptidase 37 164 IPR036286 -
Lja3g2937 166 CDD S26_SPase_I 40 151 IPR019533 GO:0004252|GO:0006465
Lja3g2937 166 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 5 164 - -
Lja3g2937 166 Gene3D Umud Fragment, subunit A 35 162 - -
Lja3g2937 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lja3g2937 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lja3g2937 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 118 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lja3g2937 166 ProSitePatterns Signal peptidases I signature 3. 123 136 IPR019758 GO:0004252|GO:0016021
Lja3g2937 166 Pfam Signal peptidase, peptidase S26 114 156 IPR019533 GO:0004252|GO:0006465
Lja3g2937 166 Pfam Signal peptidase, peptidase S26 26 104 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2937 Lja-Chr3 53002890 53009018 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2937 49 164 MADS-box Gene Family AT1G29960 52.137 1.94e-41 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2937 K09647 - zju:107414309 234.958