Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2933 ATGAGGAAATCCGTTGTTATAGCCATTTCCATAACCATATGCTTCATTGCTTTTGTCATATCCAAGATTTTAATCTCAGTCCTCATCTATAAAAGATGGAGAAGAAAGCAAATGATTTATGAAGATGGTTACACAGGGGGAAAGATGGTGATATTTAGGTCTTCAGTGCTTAAATCTCTGAAATCTGATACGGTGTTAAAGAAGACACAGAAACTGAACAACAAGGACATCATTGGGTGTGGTGGTTATGGTGTGGTTTATGAACTAAAGCTGAATGAGTCCACAGCCTTTGCTGTGAAGAGGCTAAACCGTGGAACTGCAGAGAGGGATAAAGGTTTTGAGAGAGAGTTGGAAGCAATGGCAGATATAAAACACCGCAACATTGTGACTCTTCATGGATATTACACAGCACCACACTACAATCTTCTCATCTATGAGCTAATGCCCAATGGAAGTTTGGATACCTTTTTGCATGGGAGATCAATGGACAAGAAGGTTTTAGATTGGTCAACCAGATACAAAATAGCTGTAGGTGCAGCAAGAGGAATATCATATCTCCACCATGATTGCATCCCCCACATTATCCACAGAGACATCAAGTCAAGTAACATATTGCTGGATCAGAATTTAGAGGCTCGTGTTTCTGATTTTGGATTAGCCACGTTGATGGAACCAAACAAAACTCATGTTTCAACAATTGTTGCAGGAACTTTTGGATACTTGGCACCTGAATATTTTGATACAGGAAGAGCAACATTTAAAGGGGATGTTTACAGCTTTGGAGTTGTGTTACTGGAGCTTTTAACAGGGAAAAAACCCAGTGATGAAACATTTATGGAAGAGGGAACCAAGCTTGTCACATGGGTGAAGGCTGTTGTTCGAGAGAAGAAGGAGGAGTTAGTTCTTGATAGTAGCTTAGGGTCTTGTCCGGAGCAAGATGTCAACAAGGTGTTCAACATTGCAATGATGTGTCTTGAAGCAGATCCCTTGATGAGGCCAACCATGGCTGAGGTTGTCCTCATGCTTGAGCAAACAGAACCAGAAAAACCAGTTACAGCATCCTCATGA 1068 0.4101 MRKSVVIAISITICFIAFVISKILISVLIYKRWRRKQMIYEDGYTGGKMVIFRSSVLKSLKSDTVLKKTQKLNNKDIIGCGGYGVVYELKLNESTAFAVKRLNRGTAERDKGFERELEAMADIKHRNIVTLHGYYTAPHYNLLIYELMPNGSLDTFLHGRSMDKKVLDWSTRYKIAVGAARGISYLHHDCIPHIIHRDIKSSNILLDQNLEARVSDFGLATLMEPNKTHVSTIVAGTFGYLAPEYFDTGRATFKGDVYSFGVVLLELLTGKKPSDETFMEEGTKLVTWVKAVVREKKEELVLDSSLGSCPEQDVNKVFNIAMMCLEADPLMRPTMAEVVLMLEQTEPEKPVTASS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2933 355 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Lja3g2933 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Lja3g2933 355 PANTHER BNAA07G39120D PROTEIN 1 347 - -
Lja3g2933 355 ProSiteProfiles Protein kinase domain profile. 72 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2933 355 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 347 - -
Lja3g2933 355 Pfam Protein tyrosine and serine/threonine kinase 74 340 IPR001245 GO:0004672|GO:0006468
Lja3g2933 355 Gene3D Phosphorylase Kinase; domain 1 48 147 - -
Lja3g2933 355 SUPERFAMILY Protein kinase-like (PK-like) 53 344 IPR011009 -
Lja3g2933 355 SMART serkin_6 72 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2933 355 Gene3D Transferase(Phosphotransferase) domain 1 148 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2933 Lja-Chr3 52912468 52916116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2933 3 344 Receptor kinase-like Gene Family AT2G35620 45.507 6.18e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Lja3g2933 PK_Tyr_Ser-Thr 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2933 - - ahf:112703495 589.341